Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABFU48_RS05295 Genome accession   NZ_CP155976
Coordinates   1257439..1258833 (-) Length   464 a.a.
NCBI ID   WP_323530785.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain 0516     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1252439..1263833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU48_RS05270 (ABFU48_05260) - 1252764..1253330 (+) 567 WP_407469972.1 glycosyltransferase -
  ABFU48_RS05275 (ABFU48_05265) - 1253327..1253560 (+) 234 WP_407469973.1 hypothetical protein -
  ABFU48_RS05280 (ABFU48_05270) - 1253822..1254598 (+) 777 WP_407469974.1 glycosyltransferase family 2 protein -
  ABFU48_RS05285 (ABFU48_05275) - 1254591..1255199 (+) 609 WP_323530787.1 methionine biosynthesis protein MetW -
  ABFU48_RS05290 (ABFU48_05280) pilB 1255292..1257025 (+) 1734 WP_323530786.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFU48_RS05295 (ABFU48_05285) pilR 1257439..1258833 (-) 1395 WP_323530785.1 sigma-54 dependent transcriptional regulator Regulator
  ABFU48_RS05300 (ABFU48_05290) - 1259043..1260653 (-) 1611 WP_070690016.1 PAS domain-containing sensor histidine kinase -
  ABFU48_RS05305 (ABFU48_05295) sucC 1260887..1262056 (+) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  ABFU48_RS05310 (ABFU48_05300) sucD 1262081..1262956 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  ABFU48_RS05315 (ABFU48_05305) - 1263060..1263470 (+) 411 WP_323475266.1 CopG family ribbon-helix-helix protein -
  ABFU48_RS05320 (ABFU48_05310) - 1263474..1263776 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50278.72 Da        Isoelectric Point: 6.5131

>NTDB_id=1000583 ABFU48_RS05295 WP_323530785.1 1257439..1258833(-) (pilR) [Xanthomonas campestris pv. raphani strain 0516]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDLISATDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1000583 ABFU48_RS05295 WP_323530785.1 1257439..1258833(-) (pilR) [Xanthomonas campestris pv. raphani strain 0516]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGTGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCACCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTCCAGGCCGCGCACGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTT
TTCGTCACGACCTGTACTACCGCATCAACGTGATCGAGCTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATCCCATTGCTCACCCAGTCCGCGCTCGA
TGCCCTGAACCAATACGGATTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGTGCGCTTGCCCTGGCCGAAG
ACGACCTGATCAGCGCCACCGACCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCTGCTTCCTCCGCCCTGCCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAATTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.851

99.784

0.627
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment