Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABFU38_RS05500 Genome accession   NZ_CP155967
Coordinates   1305513..1306907 (-) Length   464 a.a.
NCBI ID   WP_070690014.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain BXC#141     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1300513..1311907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU38_RS05480 (ABFU38_05475) - 1301093..1302253 (+) 1161 WP_407469263.1 hypothetical protein -
  ABFU38_RS05485 (ABFU38_05480) pilB 1302307..1304040 (+) 1734 WP_407469264.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFU38_RS05490 (ABFU38_05485) - 1304223..1305014 (-) 792 WP_407462317.1 toxin -
  ABFU38_RS05495 (ABFU38_05490) - 1304959..1305315 (-) 357 WP_139328384.1 hypothetical protein -
  ABFU38_RS05500 (ABFU38_05495) pilR 1305513..1306907 (-) 1395 WP_070690014.1 sigma-54 dependent transcriptional regulator Regulator
  ABFU38_RS05505 (ABFU38_05500) - 1307116..1308726 (-) 1611 WP_407460383.1 sensor histidine kinase -
  ABFU38_RS05510 (ABFU38_05505) sucC 1308960..1310129 (+) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  ABFU38_RS05515 (ABFU38_05510) sucD 1310154..1311029 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  ABFU38_RS05520 (ABFU38_05515) - 1311133..1311543 (+) 411 WP_407469574.1 DNA-binding protein -
  ABFU38_RS05525 (ABFU38_05520) - 1311547..1311849 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50265.64 Da        Isoelectric Point: 6.3588

>NTDB_id=1000426 ABFU38_RS05500 WP_070690014.1 1305513..1306907(-) (pilR) [Xanthomonas campestris pv. raphani strain BXC#141]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1000426 ABFU38_RS05500 WP_070690014.1 1305513..1306907(-) (pilR) [Xanthomonas campestris pv. raphani strain BXC#141]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACTTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACACCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCCTTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CCCCCGAACAGGCAAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCACCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTTCAGGCCGCCCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTACGCATCCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTGCGCGTTCCGCCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCGATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGGTGGAACAAGACCAGAACTGCCGCGCAGCTAGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment