265901

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 961934..962559 Replicon chromosome
Accession NZ_CP113535
Organism Salmonella enterica strain ZLQ

Toxin (Protein)


Gene name vapC Uniprot ID M7SD17
Locus tag OXV11_RS04725 Protein ID WP_000911336.1
Coordinates 962161..962559 (+) Length 133 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID M7S3S8
Locus tag OXV11_RS04720 Protein ID WP_000557549.1
Coordinates 961934..962161 (+) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OXV11_RS04690 (956979) 956979..958496 + 1518 WP_000003339.1 lysine--tRNA ligase -
OXV11_RS04695 (958572) 958572..959117 - 546 WP_000133994.1 isopentenyl-diphosphate Delta-isomerase -
OXV11_RS04700 (959382) 959382..960140 + 759 WP_000244329.1 amidase activator ActS -
OXV11_RS04710 (960425) 960425..961231 - 807 WP_010989071.1 DUF1460 domain-containing protein -
OXV11_RS04715 (961506) 961506..961757 - 252 WP_001540858.1 hypothetical protein -
OXV11_RS04720 (961934) 961934..962161 + 228 WP_000557549.1 toxin-antitoxin system antitoxin VapB Antitoxin
OXV11_RS04725 (962161) 962161..962559 + 399 WP_000911336.1 tRNA(fMet)-specific endonuclease VapC Toxin
OXV11_RS04730 (963365) 963365..963901 + 537 WP_001038506.1 STM3031 family outer membrane protein -
OXV11_RS04735 (963948) 963948..964580 + 633 WP_000835265.1 YfdX family protein -
OXV11_RS04740 (965299) 965299..965883 + 585 WP_001244638.1 fimbrial protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - - 960425..971750 11325


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-123)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 14938.30 Da        Isoelectric Point: 7.2155

>T265901 WP_000911336.1 NZ_CP113535:962161-962559 [Salmonella enterica]
MLKFMLDTNTCIFTIKNKPEHIRERFNLNTSRMCISSITLMELIYGAEKSLAPERNLAVVEGFISRLEVLDYDTQAAIHT
GQIRAELARKGTPVGPYDQMIAGHAGSRGLVVVTNNLREFERIPGIRIEDWC

Download         Length: 399 bp

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8514.51 Da        Isoelectric Point: 5.0210

>AT265901 WP_000557549.1 NZ_CP113535:961934-962161 [Salmonella enterica]
MHTTLFFSNRTQAVRLPKSISFPEDVKHVEIIAVGRSRIITPVGESWDSWFDGEGASTDFMSTREQPAVQEREGF

Download         Length: 228 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6IFC
PDB 6IFM

Antitoxin

Source ID Structure
AlphaFold DB A0A3V2Y5V5

References