146566

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 881159..881784 Replicon chromosome
Accession NZ_CP047544
Organism Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10250

Toxin (Protein)


Gene name vapC Uniprot ID M7SD17
Locus tag DXN29_RS04285 Protein ID WP_000911336.1
Coordinates 881386..881784 (+) Length 133 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID M7S3S8
Locus tag DXN29_RS04280 Protein ID WP_000557549.1
Coordinates 881159..881386 (+) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DXN29_RS04250 (876204) 876204..877721 + 1518 WP_000003339.1 lysine--tRNA ligase -
DXN29_RS04255 (877797) 877797..878342 - 546 WP_000133994.1 isopentenyl-diphosphate Delta-isomerase -
DXN29_RS04260 (878607) 878607..879365 + 759 WP_000244329.1 amidase activator ActS -
DXN29_RS04270 (879650) 879650..880456 - 807 WP_010989071.1 DUF1460 domain-containing protein -
DXN29_RS04275 (880731) 880731..880982 - 252 WP_001540858.1 hypothetical protein -
DXN29_RS04280 (881159) 881159..881386 + 228 WP_000557549.1 toxin-antitoxin system antitoxin VapB Antitoxin
DXN29_RS04285 (881386) 881386..881784 + 399 WP_000911336.1 tRNA(fMet)-specific endonuclease VapC Toxin
DXN29_RS04290 (882590) 882590..883126 + 537 WP_001038506.1 STM3031 family outer membrane protein -
DXN29_RS04295 (883173) 883173..883805 + 633 WP_000835265.1 YfdX family protein -
DXN29_RS04300 (884524) 884524..885108 + 585 WP_001244638.1 fimbrial protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - - 879650..890975 11325


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-123)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 14938.30 Da        Isoelectric Point: 7.2155

>T146566 WP_000911336.1 NZ_CP047544:881386-881784 [Salmonella enterica subsp. enterica serovar Typhimurium]
MLKFMLDTNTCIFTIKNKPEHIRERFNLNTSRMCISSITLMELIYGAEKSLAPERNLAVVEGFISRLEVLDYDTQAAIHT
GQIRAELARKGTPVGPYDQMIAGHAGSRGLVVVTNNLREFERIPGIRIEDWC

Download         Length: 399 bp

>T146566 NZ_CP062761:c5073203-5073030 [Escherichia coli O157:H7]
ATGGCACTATTCTCTAAAATATTAATTTTTTATGTGATTGGTGTGAACATATCCTTTGTCATTATCTGGTTTATCTCACA
TGAGAAAACACATATTCGTTTACTTAGTGCATTCCTGGTCGGAATAACCTGGCCAATGAGTCTGCCTGTGGCATTACTTT
TTTCTCTCTTTTAG

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8514.51 Da        Isoelectric Point: 5.0210

>AT146566 WP_000557549.1 NZ_CP047544:881159-881386 [Salmonella enterica subsp. enterica serovar Typhimurium]
MHTTLFFSNRTQAVRLPKSISFPEDVKHVEIIAVGRSRIITPVGESWDSWFDGEGASTDFMSTREQPAVQEREGF

Download         Length: 228 bp

>AT146566 NZ_CP062761:c5073527-5073231 [Escherichia coli O157:H7]
ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCTCAGTGTTCTTAAGGTT
AAGATCATTGATGTATGATATGAATTTCTCTTCTATCGTGGCTGATGAATATGGGATACCACGACAATTGAATGAAAATT
CCTTCGCAATAACGACATCGTTAGCCGCAAGTGAAATCGAAGATTTAATCAGGCTTAAATGCTTAGACTTACCGGATATT
GACTTTGACCTCAACATTATGACAGTTGATGACTATTTCCGTCAGTTTTACAAGTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6IFC
PDB 6IFM

Antitoxin

Source ID Structure
PDB 6IFM
AlphaFold DB A0A3V2Y5V5

References