MGE detailed information
MGE type: Conjugative plasmid MGE length: 115409 bp
Accession: NZ_OX030729 Location: 1..115409 Organism: Escherichia coli isolate 68 Replicon: plasmid P1
Accession: NZ_OX030729 Location: 1..115409 Organism: Escherichia coli isolate 68 Replicon: plasmid P1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ200_RS25275 (1) | 1..978 | + | 978 | WP_000361612.1 | RepB family plasmid replication initiator protein | - |
| LQ200_RS25280 (1263) | 1263..2003 | - | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| LQ200_RS25285 (2067) | 2067..2771 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LQ200_RS25290 (2835) | 2835..3041 | - | 207 | Protein_3 | IS4 family transposase IS10R | Transposase |
| LQ200_RS25295 (3184) | 3184..4044 | + | 861 | WP_000557454.1 | SPbeta prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| LQ200_RS25300 (4057) | 4057..4599 | + | 543 | WP_000587837.1 | AAA family ATPase | - |
| LQ200_RS25305 (5081) | 5081..5272 | - | 192 | WP_000951934.1 | hypothetical protein | - |
| LQ200_RS25310 (5296) | 5296..5523 | + | 228 | WP_000248278.1 | hypothetical protein | - |
| LQ200_RS25315 (5574) | 5574..6701 | + | 1128 | WP_014837927.1 | DUF3883 domain-containing protein | - |
| LQ200_RS25320 (6738) | 6738..7442 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LQ200_RS25325 (7765) | 7765..9249 | - | 1485 | WP_032152108.1 | IS91 family transposase ISVsa3 | Transposase |
| LQ200_RS25330 (9524) | 9524..9865 | - | 342 | WP_023909256.1 | 60 kDa chaperonin | VF |
| LQ200_RS25335 (9826) | 9826..10275 | - | 450 | WP_013362817.1 | hypothetical protein | - |
| LQ200_RS25340 (10905) | 10905..11642 | - | 738 | WP_013362818.1 | rRNA adenine N-6-methyltransferase | ARG |
| LQ200_RS25345 (11768) | 11768..11863 | - | 96 | WP_013362819.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| LQ200_RS25350 (11998) | 11998..12702 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LQ200_RS25355 (12824) | 12824..13729 | + | 906 | WP_000219391.1 | hypothetical protein | ARG |
| LQ200_RS25360 (13726) | 13726..14964 | + | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
| LQ200_RS25365 (14964) | 14964..15548 | + | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| LQ200_RS25370 (16041) | 16041..16805 | - | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| LQ200_RS25375 (16923) | 16923..16988 | - | 66 | Protein_20 | EAL domain-containing protein | - |
| LQ200_RS25380 (17032) | 17032..17337 | - | 306 | WP_000130000.1 | Transcriptional regulator | Relaxase |
| LQ200_RS25385 (17348) | 17348..18553 | - | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| LQ200_RS25390 (18709) | 18709..18912 | - | 204 | WP_000376616.1 | hypothetical protein | - |
| LQ200_RS25395 (19040) | 19040..19879 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| LQ200_RS25400 (19873) | 19873..20220 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| LQ200_RS25405 (20426) | 20426..21214 | - | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| LQ200_RS25410 (21345) | 21345..21818 | - | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| LQ200_RS25415 (21976) | 21976..22656 | + | 681 | Protein_28 | IS91 family transposase ISAzo26 | Transposase |
| LQ200_RS25420 (22721) | 22721..23425 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LQ200_RS25425 (23569) | 23569..24123 | + | 555 | WP_063840321.1 | Aminoglycoside N(6')-acetyltransferase type 1 | ARG |
| LQ200_RS25430 (24254) | 24254..25084 | + | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| LQ200_RS25435 (25222) | 25222..25854 | + | 633 | WP_000186237.1 | Chloramphenicol acetyltransferase | VF |
| LQ200_RS25440 (25939) | 25939..26184 | + | 246 | Protein_33 | NAD(+)--rifampin ADP-ribosyltransferase | - |
| LQ200_RS25445 (26238) | 26238..26942 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LQ200_RS25450 (27184) | 27184..28044 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| LQ200_RS25455 (28194) | 28194..28292 | - | 99 | Protein_36 | IS1 family transposase | - |
| LQ200_RS25460 (28321) | 28321..29631 | - | 1311 | WP_001262765.1 | DUF262 domain-containing protein | - |
| LQ200_RS25465 (29916) | 29916..30317 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| LQ200_RS25470 (30250) | 30250..30507 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| LQ200_RS25475 (30600) | 30600..31253 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| LQ200_RS25480 (31351) | 31351..31491 | - | 141 | WP_001333237.1 | hypothetical protein | - |
| LQ200_RS25485 (32193) | 32193..32969 | - | 777 | WP_143359178.1 | plasmid replication initiator RepA | - |
| LQ200_RS25490 (32962) | 32962..33036 | - | 75 | WP_031943482.1 | RepA leader peptide Tap | - |
| LQ200_RS25495 (33036) | 33036..33167 | - | 132 | Protein_44 | protein CopA/IncA | - |
| LQ200_RS25500 (33273) | 33273..33527 | - | 255 | WP_000083850.1 | replication regulatory protein RepA | - |
| LQ200_RS25505 (33824) | 33824..33958 | - | 135 | WP_023144756.1 | Hok/Gef family protein | Toxin Detail |
| - (34003) | 34003..34063 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (34003) | 34003..34063 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (34003) | 34003..34063 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (34003) | 34003..34063 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| LQ200_RS25510 (34030) | 34030..34316 | - | 287 | Protein_47 | DUF2726 domain-containing protein | - |
| LQ200_RS25515 (34829) | 34829..35041 | - | 213 | WP_013023861.1 | hypothetical protein | - |
| LQ200_RS25520 (35172) | 35172..35732 | - | 561 | WP_000139341.1 | fertility inhibition protein FinO | - |
| LQ200_RS25525 (35787) | 35787..36533 | - | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| LQ200_RS25530 (36553) | 36553..41823 | - | 5271 | WP_230139591.1 | Multifunctional conjugation protein TraI | Relaxase |
| LQ200_RS25535 (41823) | 41823..44030 | - | 2208 | WP_021547900.1 | type IV conjugative transfer system coupling protein TraD | - |
| LQ200_RS25540 (44027) | 44027..44806 | - | 780 | WP_000199914.1 | hypothetical protein | - |
| LQ200_RS25545 (45009) | 45009..45719 | - | 711 | WP_064754955.1 | conjugal transfer complement resistance protein TraT | - |
| LQ200_RS25550 (45772) | 45772..46269 | - | 498 | WP_000605862.1 | entry exclusion protein | - |
| LQ200_RS25555 (46288) | 46288..49107 | - | 2820 | WP_230139592.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| LQ200_RS25560 (49104) | 49104..50477 | - | 1374 | WP_000944328.1 | conjugal transfer pilus assembly protein TraH | - |
| LQ200_RS25565 (50464) | 50464..50856 | - | 393 | WP_000659962.1 | F-type conjugal transfer protein TrbF | - |
| LQ200_RS25570 (50837) | 50837..51184 | - | 348 | WP_071571857.1 | P-type conjugative transfer protein TrbJ | - |
| LQ200_RS25575 (51114) | 51114..51659 | - | 546 | WP_000059829.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| LQ200_RS25580 (51646) | 51646..51930 | - | 285 | WP_001617873.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| LQ200_RS25585 (52057) | 52057..52377 | - | 321 | WP_001348757.1 | conjugal transfer protein TrbA | - |
| LQ200_RS25595 (53277) | 53277..54257 | - | 981 | WP_000019450.1 | IS5 family transposase ISKpn26 | Transposase |
| LQ200_RS25600 (54387) | 54387..55130 | - | 744 | WP_001030401.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| LQ200_RS25605 (55123) | 55123..55380 | - | 258 | WP_000864347.1 | conjugal transfer protein TrbE | - |
| LQ200_RS25610 (55407) | 55407..57257 | - | 1851 | WP_000821866.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| LQ200_RS25615 (57254) | 57254..57892 | - | 639 | WP_001080259.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LQ200_RS25620 (57901) | 57901..58206 | - | 306 | WP_000224413.1 | hypothetical protein | - |
| LQ200_RS25625 (58236) | 58236..59228 | - | 993 | WP_000830190.1 | conjugal transfer pilus assembly protein TraU | - |
| LQ200_RS25630 (59225) | 59225..59857 | - | 633 | WP_001203727.1 | type-F conjugative transfer system protein TraW | - |
| LQ200_RS25635 (59854) | 59854..60240 | - | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| LQ200_RS25640 (60237) | 60237..62864 | - | 2628 | WP_230139593.1 | type IV secretion system protein TraC | - |
| LQ200_RS25645 (63024) | 63024..63245 | - | 222 | WP_001278694.1 | conjugal transfer protein TraR | - |
| LQ200_RS25650 (63380) | 63380..63895 | - | 516 | WP_000809886.1 | type IV conjugative transfer system lipoprotein TraV | - |
| LQ200_RS25655 (63895) | 63895..64206 | - | 312 | WP_001057272.1 | conjugal transfer protein TrbD | - |
| LQ200_RS25660 (64193) | 64193..64759 | - | 567 | WP_000896601.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| LQ200_RS25665 (64749) | 64749..66200 | - | 1452 | WP_032179311.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| LQ200_RS25670 (66200) | 66200..66928 | - | 729 | WP_001230808.1 | type-F conjugative transfer system secretin TraK | - |
| LQ200_RS25675 (66915) | 66915..67481 | - | 567 | WP_000399791.1 | type IV conjugative transfer system protein TraE | - |
| LQ200_RS25680 (67503) | 67503..67814 | - | 312 | WP_000012107.1 | type IV conjugative transfer system protein TraL | - |
| LQ200_RS25685 (67819) | 67819..68181 | - | 363 | WP_000338606.1 | type IV conjugative transfer system pilin TraA | - |
| LQ200_RS25690 (68215) | 68215..68442 | - | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| LQ200_RS25695 (68530) | 68530..69207 | - | 678 | WP_001348626.1 | PAS domain-containing protein | - |
| LQ200_RS25700 (69341) | 69341..69724 | - | 384 | WP_001151566.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LQ200_RS25705 (70055) | 70055..70657 | + | 603 | WP_000243712.1 | hypothetical protein | VF |
| LQ200_RS25710 (70954) | 70954..71775 | - | 822 | WP_001234469.1 | DUF932 domain-containing protein | - |
| LQ200_RS25715 (71894) | 71894..72181 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| LQ200_RS25720 (72206) | 72206..72412 | - | 207 | WP_000275859.1 | hypothetical protein | - |
| LQ200_RS25725 (72482) | 72482..72655 | + | 174 | Protein_90 | hypothetical protein | - |
| LQ200_RS25730 (73384) | 73384..75051 | + | 1668 | WP_001091723.1 | group II intron reverse transcriptase/maturase | - |
| LQ200_RS25735 (75365) | 75365..75556 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| LQ200_RS25740 (75553) | 75553..75975 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| LQ200_RS25745 (76022) | 76022..76447 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| LQ200_RS25750 (76864) | 76864..77640 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| LQ200_RS25755 (77691) | 77691..78209 | - | 519 | WP_123325260.1 | DUF1380 family protein | - |
| LQ200_RS25760 (78139) | 78139..78360 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| LQ200_RS25765 (78361) | 78361..79044 | - | 684 | WP_000086185.1 | DNA methylase | - |
| LQ200_RS25770 (79121) | 79121..79432 | - | 312 | WP_011254640.1 | hypothetical protein | - |
| LQ200_RS25775 (79429) | 79429..80331 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| LQ200_RS25780 (81198) | 81198..82169 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| LQ200_RS25785 (82169) | 82169..83335 | - | 1167 | WP_000772446.1 | hypothetical protein | VF |
| LQ200_RS25790 (83923) | 83923..84678 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| LQ200_RS25795 (85452) | 85452..86258 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| LQ200_RS25800 (86259) | 86259..86564 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| LQ200_RS25805 (86566) | 86566..86784 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| LQ200_RS25810 (87418) | 87418..87615 | + | 198 | WP_000215657.1 | hypothetical protein | - |
| LQ200_RS25815 (87612) | 87612..87896 | - | 285 | WP_000642771.1 | hypothetical protein | - |
| LQ200_RS25820 (87916) | 87916..89049 | - | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| LQ200_RS25825 (89312) | 89312..90949 | - | 1638 | WP_223201785.1 | hypothetical protein | - |
| LQ200_RS25830 (91292) | 91292..92520 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| LQ200_RS25835 (92445) | 92445..93767 | - | 1323 | WP_230139594.1 | hypothetical protein | - |
| LQ200_RS25840 (94074) | 94074..94304 | + | 231 | WP_001261287.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| LQ200_RS25845 (94301) | 94301..94717 | + | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LQ200_RS25850 (94879) | 94879..97017 | - | 2139 | WP_000350635.1 | AAA family ATPase | - |
| LQ200_RS25855 (97482) | 97482..98477 | + | 996 | WP_000246636.1 | hypothetical protein | - |
| LQ200_RS25860 (98520) | 98520..99413 | + | 894 | WP_001553853.1 | S-4TM family putative pore-forming effector | - |
| LQ200_RS25870 (100461) | 100461..103577 | - | 3117 | WP_001553854.1 | HsdR family type I site-specific deoxyribonuclease | - |
| LQ200_RS25875 (103699) | 103699..104970 | - | 1272 | WP_048266692.1 | restriction endonuclease subunit S | - |
| LQ200_RS25880 (104967) | 104967..106523 | - | 1557 | WP_001553856.1 | type I restriction-modification system subunit M | - |
| LQ200_RS25885 (106706) | 106706..106927 | + | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| LQ200_RS25890 (106927) | 106927..107307 | + | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| LQ200_RS25895 (107312) | 107312..107491 | + | 180 | WP_001513661.1 | hypothetical protein | - |
| LQ200_RS25900 (107519) | 107519..107797 | + | 279 | Protein_125 | pdcB | - |
| LQ200_RS25905 (107802) | 107802..108215 | + | 414 | Protein_126 | IS3 family transposase ISLad1 | Transposase |
| LQ200_RS25910 (108165) | 108165..108500 | - | 336 | WP_169329198.1 | type I deoxyribonuclease HsdR | - |
| LQ200_RS25915 (108710) | 108710..109690 | - | 981 | WP_000019407.1 | IS5 family transposase IS5D | Transposase |
| LQ200_RS25920 (109934) | 109934..111337 | + | 1404 | WP_001373486.1 | S-methylmethionine permease | - |
| LQ200_RS25925 (111324) | 111324..112256 | + | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| LQ200_RS25930 (112365) | 112365..112694 | - | 330 | Protein_131 | TOBE domain-containing protein | - |
| LQ200_RS25940 (113684) | 113684..114654 | - | 971 | Protein_133 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|