MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_OU015340 Location: 4131305..4142630 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00027944 isolate AUSMDU00027944 Replicon: chromosome
Accession: NZ_OU015340 Location: 4131305..4142630 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00027944 isolate AUSMDU00027944 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KKR00_RS20825 (4126751) | 4126751..4127849 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| KKR00_RS20830 (4127859) | 4127859..4129376 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| KKR00_RS20835 (4129452) | 4129452..4129997 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| KKR00_RS20840 (4130262) | 4130262..4131020 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| KKR00_RS20850 (4131305) | 4131305..4132111 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| KKR00_RS20855 (4132386) | 4132386..4132637 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| KKR00_RS20860 (4132814) | 4132814..4133041 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| KKR00_RS20865 (4133041) | 4133041..4133439 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| KKR00_RS20870 (4134245) | 4134245..4134781 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| KKR00_RS20875 (4134828) | 4134828..4135460 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| KKR00_RS20880 (4136179) | 4136179..4136763 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| KKR00_RS20885 (4136883) | 4136883..4139372 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| KKR00_RS20890 (4139413) | 4139413..4140156 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| KKR00_RS20895 (4140153) | 4140153..4141229 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| KKR00_RS20900 (4141373) | 4141373..4141885 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| KKR00_RS20905 (4141872) | 4141872..4142630 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| KKR00_RS20910 (4142840) | 4142840..4143700 | - | 861 | WP_000503684.1 | nickel/cobalt efflux protein RcnA | - |
| KKR00_RS20915 (4143822) | 4143822..4144094 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| KKR00_RS20920 (4144125) | 4144125..4145354 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| KKR00_RS20925 (4145496) | 4145496..4145951 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| KKR00_RS20930 (4146055) | 4146055..4146918 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |