MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_OU015323 Location: 4133482..4144807 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00004549 isolate AUSMDU00004549 Replicon: chromosome
Accession: NZ_OU015323 Location: 4133482..4144807 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00004549 isolate AUSMDU00004549 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KKQ99_RS20850 (4128928) | 4128928..4130026 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| KKQ99_RS20855 (4130036) | 4130036..4131553 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| KKQ99_RS20860 (4131629) | 4131629..4132174 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| KKQ99_RS20865 (4132439) | 4132439..4133197 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| KKQ99_RS20875 (4133482) | 4133482..4134288 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| KKQ99_RS20880 (4134563) | 4134563..4134814 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| KKQ99_RS20885 (4134991) | 4134991..4135218 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| KKQ99_RS20890 (4135218) | 4135218..4135616 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| KKQ99_RS20895 (4136422) | 4136422..4136958 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| KKQ99_RS20900 (4137005) | 4137005..4137637 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| KKQ99_RS20905 (4138356) | 4138356..4138940 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| KKQ99_RS20910 (4139060) | 4139060..4141549 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| KKQ99_RS20915 (4141590) | 4141590..4142333 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| KKQ99_RS20920 (4142330) | 4142330..4143406 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| KKQ99_RS20925 (4143550) | 4143550..4144062 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| KKQ99_RS20930 (4144049) | 4144049..4144807 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| KKQ99_RS20935 (4145017) | 4145017..4145883 | - | 867 | WP_000503682.1 | nickel/cobalt efflux protein RcnA | - |
| KKQ99_RS20940 (4146005) | 4146005..4146277 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| KKQ99_RS20945 (4146308) | 4146308..4147537 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| KKQ99_RS20950 (4147679) | 4147679..4148134 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| KKQ99_RS20955 (4148238) | 4148238..4149101 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |