MGE detailed information
MGE type: Genomic_island MGE length: 32080 bp
Accession: NZ_LM993812 Location: 2708540..2740619 Organism: Escherichia coli strain K-12 substr. HMS174 Replicon: chromosome
Accession: NZ_LM993812 Location: 2708540..2740619 Organism: Escherichia coli strain K-12 substr. HMS174 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECHMS174_RS13385 () | 2704176..2705837 | + | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| ECHMS174_RS13390 () | 2705986..2706327 | + | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| ECHMS174_RS13395 () | 2706389..2706679 | - | 291 | WP_001117838.1 | RnfH family protein | - |
| ECHMS174_RS13400 () | 2706669..2707106 | - | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| ECHMS174_RS13405 () | 2707277..2707759 | + | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| ECHMS174_RS13410 () | 2708540..2709781 | + | 1242 | WP_000101723.1 | hypothetical protein ; Integrase | Integrase |
| ECHMS174_RS13415 () | 2710025..2710981 | - | 957 | WP_000510827.1 | hypothetical protein | - |
| ECHMS174_RS13420 () | 2711025..2711237 | + | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| ECHMS174_RS13425 () | 2711366..2712775 | + | 1410 | WP_000481742.1 | DUF3987 domain-containing protein | - |
| ECHMS174_RS13430 () | 2712928..2713554 | + | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| ECHMS174_RS13435 () | 2713732..2715921 | - | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| ECHMS174_RS13440 () | 2715918..2717534 | - | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| ECHMS174_RS13445 () | 2717894..2718157 | - | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| ECHMS174_RS13450 () | 2718299..2719372 | + | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| ECHMS174_RS13455 () | 2719365..2719736 | + | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| ECHMS174_RS13460 () | 2720091..2720954 | + | 864 | WP_000787597.1 | GTPase family protein | - |
| ECHMS174_RS13465 () | 2721046..2721867 | + | 822 | WP_000197391.1 | DUF945 domain-containing protein | - |
| ECHMS174_RS13470 () | 2722084..2722785 | + | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| ECHMS174_RS13475 () | 2722826..2723062 | + | 237 | WP_001144029.1 | hypothetical protein | - |
| ECHMS174_RS13480 () | 2723062..2723505 | + | 444 | WP_000824222.1 | hypothetical protein | - |
| ECHMS174_RS13485 () | 2723529..2723996 | + | 468 | WP_000702495.1 | hypothetical protein | - |
| ECHMS174_RS13490 () | 2724221..2724535 | - | 315 | WP_000065803.1 | arsenate reductase | - |
| ECHMS174_RS13495 () | 2724548..2725557 | - | 1010 | Protein_2579 | arsenic transporter | - |
| ECHMS174_RS13500 () | 2725699..2727402 | + | 1704 | WP_000896263.1 | hypothetical protein | - |
| ECHMS174_RS23890 () | 2727974..2728197 | + | 224 | Protein_2581 | DUF905 family protein | - |
| ECHMS174_RS13505 () | 2728300..2728758 | + | 459 | WP_000211841.1 | antirestriction protein | - |
| ECHMS174_RS13510 () | 2728767..2729249 | + | 483 | WP_001407480.1 | RadC family protein | - |
| ECHMS174_RS23895 () | 2729258..2729458 | + | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| ECHMS174_RS13515 () | 2729496..2729813 | + | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| ECHMS174_RS13520 () | 2729834..2730163 | + | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| ECHMS174_RS22835 () | 2730527..2735107 | - | 4581 | WP_010723187.1 | hypothetical protein | VF |
| ECHMS174_RS23900 () | 2735172..2735291 | - | 120 | WP_001120794.1 | hypothetical protein | - |
| ECHMS174_RS23910 () | 2735446..2735664 | - | 219 | WP_071524906.1 | recombinase family protein | - |
| ECHMS174_RS25430 () | 2736019..2737392 | - | 1374 | Protein_2590 | DUF5507 domain-containing protein | - |
| ECHMS174_RS25715 () | 2738778..2741030 | + | 2253 | Protein_2591 | hypothetical protein | - |
| ECHMS174_RS13575 () | 2741366..2742343 | + | 978 | WP_000993126.1 | carbon starvation induced protein CsiD | - |
| ECHMS174_RS13580 () | 2742363..2743631 | + | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| ECHMS174_RS13585 () | 2743654..2745102 | + | 1449 | WP_000772831.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0.001 |