MGE detailed information
MGE type: Genomic_island MGE length: 13246 bp
Accession: NZ_CP126325 Location: 879262..892507 Organism: Salmonella enterica subsp. enterica strain HL21 Replicon: chromosome
Accession: NZ_CP126325 Location: 879262..892507 Organism: Salmonella enterica subsp. enterica strain HL21 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QN088_RS04220 (875076) | 875076..876593 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| QN088_RS04225 (876669) | 876669..877214 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| QN088_RS04230 (877479) | 877479..878237 | + | 759 | WP_000244328.1 | amidase activator ActS | - |
| QN088_RS04240 (879262) | 879262..880905 | + | 1644 | WP_284546205.1 | group II intron reverse transcriptase/maturase | - |
| QN088_RS04245 (881156) | 881156..881962 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| QN088_RS04250 (882237) | 882237..882488 | - | 252 | WP_001673708.1 | hypothetical protein | - |
| QN088_RS04255 (882697) | 882697..882924 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| QN088_RS04260 (882924) | 882924..883322 | + | 399 | WP_000911337.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| QN088_RS04265 (884129) | 884129..884665 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| QN088_RS04270 (884712) | 884712..885344 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| QN088_RS04275 (886063) | 886063..886647 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| QN088_RS04280 (886767) | 886767..889250 | + | 2484 | WP_284546206.1 | Outer membrane usher protein PapC | VF |
| QN088_RS04285 (889291) | 889291..890034 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| QN088_RS04290 (890031) | 890031..891107 | + | 1077 | WP_023244886.1 | outer membrane protein | - |
| QN088_RS04295 (891250) | 891250..891762 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| QN088_RS04300 (891749) | 891749..892507 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| QN088_RS04305 (892717) | 892717..893565 | - | 849 | WP_206226257.1 | nickel/cobalt efflux protein RcnA | - |
| QN088_RS04310 (893688) | 893688..893960 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| QN088_RS04315 (893991) | 893991..895220 | - | 1230 | WP_000036840.1 | amino acid permease | - |
| QN088_RS04320 (895362) | 895362..895817 | - | 456 | WP_023244884.1 | multidrug/biocide efflux PACE transporter | - |
| QN088_RS04325 (895921) | 895921..896784 | + | 864 | WP_023138777.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.009 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.008 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.007 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.006 |