MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP126138 Location: 848170..859495 Organism: Salmonella enterica subsp. enterica serovar Kottbus strain DSK01 Replicon: chromosome
Accession: NZ_CP126138 Location: 848170..859495 Organism: Salmonella enterica subsp. enterica serovar Kottbus strain DSK01 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QNM33_RS04075 (843616) | 843616..844714 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| QNM33_RS04080 (844724) | 844724..846241 | + | 1518 | WP_187790965.1 | lysine--tRNA ligase | - |
| QNM33_RS04085 (846317) | 846317..846862 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| QNM33_RS04090 (847127) | 847127..847885 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| QNM33_RS04100 (848170) | 848170..848976 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| QNM33_RS04105 (849251) | 849251..849502 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| QNM33_RS04110 (849679) | 849679..849906 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| QNM33_RS04115 (849906) | 849906..850304 | + | 399 | WP_080247813.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| QNM33_RS04120 (851110) | 851110..851646 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| QNM33_RS04125 (851693) | 851693..852325 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| QNM33_RS04130 (853044) | 853044..853628 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| QNM33_RS04135 (853748) | 853748..856237 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| QNM33_RS04140 (856278) | 856278..857021 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| QNM33_RS04145 (857018) | 857018..858094 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| QNM33_RS04150 (858238) | 858238..858750 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| QNM33_RS04155 (858737) | 858737..859495 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| QNM33_RS04160 (859705) | 859705..860619 | - | 915 | WP_063320241.1 | nickel/cobalt efflux protein RcnA | - |
| QNM33_RS04165 (860741) | 860741..861013 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| QNM33_RS04170 (861044) | 861044..862273 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| QNM33_RS04175 (862415) | 862415..862870 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| QNM33_RS04180 (862974) | 862974..863837 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |