MGE detailed information

MGE type: Conjugative plasmid        MGE length: 159725 bp
Accession: NZ_CP123267        Location: 1..159725         Organism: Escherichia coli strain YZLc23-1       Replicon: plasmid pYZLc23-1_159k


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N4686_RS23665 (1) 1..978 + 978 WP_000361611.1 RepB family plasmid replication initiator protein -
N4686_RS23670 (1263) 1263..2003 - 741 WP_001066954.1 tyrosine-type recombinase/integrase -
N4686_RS23675 (2124) 2124..2312 - 189 WP_001312821.1 hypothetical protein -
N4686_RS23680 (2686) 2686..3588 - 903 WP_001312822.1 hypothetical protein VF
N4686_RS23685 (3657) 3657..4766 - 1110 WP_000771475.1 SDR family oxidoreductase -
N4686_RS23690 (5199) 5199..6152 - 954 WP_000280980.1 Protease 7 VF
N4686_RS23695 (7449) 7449..7628 - 180 Protein_6 integrase core domain-containing protein -
N4686_RS23700 (7767) 7767..8506 + 740 Protein_7 IS3 family transposase IS629 Transposase
N4686_RS23705 (9018) 9018..9140 + 123 WP_001406634.1 hypothetical protein -
N4686_RS23710 (9179) 9179..10687 + 1509 WP_001189111.1 group II intron reverse transcriptase/maturase -
N4686_RS23715 (10771) 10771..11250 + 480 Protein_10 IS3 family transposase IS629 Transposase
N4686_RS23720 (11398) 11398..11666 - 269 Protein_11 IS3 family transposase ISLad1 Transposase
N4686_RS23725 (11723) 11723..12420 + 698 WP_224158172.1 IS1 family transposase IS1S Transposase
N4686_RS23730 (12498) 12498..13887 - 1390 Protein_13 ISNCY family transposase ISKpn21 Transposase
N4686_RS23735 (14197) 14197..14346 - 150 Protein_14 IS3 family transposase IS2 Transposase
N4686_RS23740 (14524) 14524..15717 - 1194 WP_000450494.1 GTP-binding protein -
N4686_RS23745 (16940) 16940..18176 - 1237 Protein_16 IS3 family transposase IS2 Transposase
N4686_RS23750 (18803) 18803..19096 + 294 WP_000738422.1 increased serum survival lipoprotein Iss -
N4686_RS23755 (19154) 19154..19353 - 200 Protein_18 lysis protein -
N4686_RS23760 (19907) 19907..20933 + 1027 Protein_19 IS481 family transposase ISKpn28 Transposase
N4686_RS23765 (22244) 22244..23359 + 1116 WP_001318220.1 Elloramycin glycosyltransferase ElmGT VF
N4686_RS23770 (23499) 23499..27158 + 3660 WP_001111199.1 Multidrug efflux ATP-binding/permease protein VF
N4686_RS23775 (27262) 27262..28491 + 1230 WP_000933675.1 Enterochelin esterase VF
N4686_RS23780 (28576) 28576..29532 + 957 WP_064055648.1 hypothetical protein VF
N4686_RS23785 (29577) 29577..31754 - 2178 WP_001222186.1 Ferric enterobactin receptor VF
N4686_RS23790 (31989) 31989..32686 + 698 WP_095033700.1 IS1-like element IS1B family transposase -
N4686_RS23795 (32703) 32703..32900 - 198 Protein_26 colicin V -
N4686_RS23800 (32878) 32878..33114 - 237 WP_014640552.1 colicin V immunity protein -
N4686_RS23805 (33656) 33656..33859 - 204 Protein_28 hypothetical protein -
N4686_RS23810 (34032) 34032..34199 + 168 Protein_29 colicin-B -
N4686_RS23815 (34217) 34217..34744 - 528 WP_000203272.1 colicin B immunity protein -
N4686_RS23820 (34988) 34988..35803 + 816 WP_001312845.1 lipid II-degrading bacteriocin colicin M -
N4686_RS23825 (35853) 35853..36206 - 354 WP_000864812.1 colicin M immunity protein -
N4686_RS23830 (36384) 36384..37175 - 792 WP_000016493.1 site-specific integrase -
N4686_RS23835 (37172) 37172..37861 - 690 WP_000796228.1 hypothetical protein -
N4686_RS23840 (37905) 37905..38255 - 351 WP_000493379.1 hypothetical protein -
N4686_RS23845 (38937) 38937..39932 + 996 WP_000246635.1 hypothetical protein -
N4686_RS23850 (39936) 39936..40868 + 933 WP_000991830.1 S-4TM family putative pore-forming effector -
N4686_RS23855 (41166) 41166..42254 + 1089 WP_000952231.1 hypothetical protein -
N4686_RS23860 (42256) 42256..43125 + 870 WP_000253407.1 hypothetical protein -
N4686_RS23865 (43182) 43182..44747 - 1566 WP_000741348.1 AAA family ATPase -
N4686_RS23870 (45055) 45055..45285 + 231 WP_001261287.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin Detail
N4686_RS23875 (45282) 45282..45698 + 417 WP_001044768.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
N4686_RS23880 (45860) 45860..47998 - 2139 WP_000350638.1 AAA family ATPase -
N4686_RS23885 (48352) 48352..48609 + 258 WP_000343085.1 hypothetical protein -
N4686_RS23890 (48609) 48609..49199 + 591 WP_000194575.1 hypothetical protein -
N4686_RS23895 (49462) 49462..51018 + 1557 WP_024126035.1 AAA family ATPase -
N4686_RS23900 (51209) 51209..51826 + 618 WP_000521603.1 ProQ/FINO family protein -
N4686_RS23905 (52119) 52119..53156 - 1038 WP_044502555.1 permease -
N4686_RS23910 (53261) 53261..53584 + 324 WP_001175594.1 metalloregulator ArsR/SmtB family transcription factor -
N4686_RS23915 (53783) 53783..54487 + 705 WP_102204227.1 IS6-like element IS26 family transposase -
N4686_RS23920 (54493) 54493..55140 + 648 WP_063117255.1 replication initiation protein -
N4686_RS23925 (55771) 55771..57207 - 1437 WP_000105383.1 glutathione synthase -
N4686_RS23930 (57474) 57474..58178 + 705 WP_001067858.1 IS6-like element IS26 family transposase -
N4686_RS23935 (58483) 58483..59040 + 558 WP_001235713.1 Tn3 family transposase TnpR_Tn3 Transposase
N4686_RS23940 (59223) 59223..60083 + 861 WP_000027057.1 Beta-lactamase TEM ARG
N4686_RS23945 (60253) 60253..61008 + 756 WP_012372818.1 16S rRNA (guanine(1405)-N(7))-methyltransferase ARG
N4686_RS23950 (61134) 61134..61838 + 705 WP_001067855.1 IS6-like element IS26 family transposase -
N4686_RS23955 (61893) 61893..62150 + 258 Protein_58 hypothetical protein -
N4686_RS23960 (62296) 62296..63159 + 864 WP_000612791.1 SDR family oxidoreductase -
N4686_RS23965 (63197) 63197..63442 + 246 WP_001354008.1 GrpB family protein -
N4686_RS23970 (63911) 63911..64702 + 792 WP_000034420.1 Dihydropteroate synthase ARG
N4686_RS23975 (64705) 64705..64980 - 276 WP_109023896.1 hypothetical protein -
N4686_RS23980 (65003) 65003..65635 + 633 WP_020802982.1 IS256 family transposase IS406 Transposase
N4686_RS23985 (65882) 65882..66214 - 333 WP_000800531.1 quaternary ammonium compound efflux SMR transporter QacL -
N4686_RS23990 (66337) 66337..67175 - 839 Protein_65 Streptomycin 3''-adenylyltransferase ARG
N4686_RS23995 (67268) 67268..68527 - 1260 WP_000095725.1 chloramphenicol efflux MFS transporter CmlA1 ARG
N4686_RS24000 (68742) 68742..69580 - 839 Protein_67 Streptomycin 3''-adenylyltransferase ARG
N4686_RS24005 (69586) 69586..69876 - 291 WP_001336345.1 DUF1010 domain-containing protein -
N4686_RS24010 (69988) 69988..70485 - 498 WP_001083725.1 IS1595 family transposase ISSsu9 ARG
N4686_RS24015 (70630) 70630..71139 + 510 Protein_70 IS91 family transposase ISAzo26 Transposase
N4686_RS24020 (71191) 71191..71895 - 705 WP_001067855.1 IS6-like element IS26 family transposase -
N4686_RS24025 (72046) 72046..72861 + 816 WP_000018329.1 Aminoglycoside 3'-phosphotransferase ARG
N4686_RS24030 (73051) 73051..73755 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
N4686_RS24035 (73841) 73841..76807 + 2967 WP_001138014.1 Tn3 family transposase TnpA_TnAs1 Transposase
N4686_RS24040 (76917) 76917..77195 + 279 WP_097309154.1 type II toxin-antitoxin system toxin YacB -
N4686_RS24045 (77241) 77241..78089 + 849 WP_023154360.1 3'-5' exonuclease -
N4686_RS24050 (78206) 78206..78688 + 483 WP_001311056.1 hypothetical protein -
N4686_RS24055 (78990) 78990..79337 + 348 WP_000142450.1 DUF6404 family protein -
N4686_RS24060 (79355) 79355..79540 - 186 Protein_79 hypothetical protein -
N4686_RS24065 (79766) 79766..83581 + 3816 WP_223364258.1 hypothetical protein -
N4686_RS24070 (84111) 84111..84461 + 351 WP_000493378.1 hypothetical protein -
N4686_RS24075 (84512) 84512..85255 + 744 WP_000129823.1 hypothetical protein -
N4686_RS24080 (85252) 85252..86028 + 777 WP_000015958.1 site-specific integrase -
N4686_RS24085 (86086) 86086..86343 - 258 WP_000764642.1 hypothetical protein -
N4686_RS24090 (86472) 86472..86576 - 105 WP_032409716.1 hypothetical protein -
N4686_RS24095 (86806) 86806..86994 + 189 WP_000957857.1 hypothetical protein -
N4686_RS24100 (87004) 87004..88203 + 1200 WP_000948429.1 IS91 family transposase ISSbo1 Transposase
N4686_RS24105 (88376) 88376..88738 + 363 Protein_88 FidL-like protein -
N4686_RS24110 (88743) 88743..89159 - 417 WP_014839980.1 Glutathione transferase FosA ARG
N4686_RS24115 (89545) 89545..90249 + 705 WP_001067855.1 IS6-like element IS26 family transposase -
N4686_RS24120 (90315) 90315..90860 + 546 Protein_91 Tn3 family transposase TnpA_Tn3 Transposase
N4686_RS24125 (90896) 90896..91311 - 416 Protein_92 IS1-like element IS1B family transposase -
N4686_RS24130 (91560) 91560..91961 - 402 WP_001398199.1 type II toxin-antitoxin system toxin endoribonuclease PemK -
N4686_RS24135 (91894) 91894..92151 - 258 WP_000557619.1 type II toxin-antitoxin system antitoxin PemI -
N4686_RS24140 (92244) 92244..92897 - 654 WP_000616807.1 CPBP family intramembrane metalloprotease -
N4686_RS24145 (92995) 92995..93135 - 141 WP_001333237.1 hypothetical protein -
N4686_RS24150 (93836) 93836..94693 - 858 WP_159139076.1 incFII family plasmid replication initiator RepA -
N4686_RS24155 (94686) 94686..95168 - 483 WP_001273588.1 hypothetical protein -
N4686_RS24160 (95161) 95161..95208 - 48 WP_229471593.1 hypothetical protein -
N4686_RS24165 (95199) 95199..95450 + 252 WP_223195197.1 replication protein RepA -
N4686_RS24170 (95467) 95467..95724 - 258 WP_000083845.1 replication regulatory protein RepA -
N4686_RS24175 (96008) 96008..96157 - 150 WP_001312851.1 Hok/Gef family protein Toxin Detail
- (96201) 96201..96262 + 62 NuclAT_1 - -
- (96201) 96201..96262 + 62 NuclAT_1 - -
- (96201) 96201..96262 + 62 NuclAT_1 - -
- (96201) 96201..96262 + 62 NuclAT_1 - -
N4686_RS24180 (96518) 96518..96592 - 75 Protein_103 endonuclease -
N4686_RS24185 (96838) 96838..97050 - 213 WP_001299730.1 ANR family transcriptional regulator -
N4686_RS24190 (97186) 97186..97746 - 561 WP_000139315.1 fertility inhibition protein FinO -
N4686_RS24195 (97849) 97849..98709 - 861 WP_000704514.1 Quorum-quenching protein AidA VF
N4686_RS24200 (98768) 98768..99514 - 747 WP_000205749.1 conjugal transfer pilus acetylase TraX -
N4686_RS24205 (99534) 99534..104804 - 5271 WP_000986962.1 Multifunctional conjugation protein TraI Relaxase
N4686_RS24210 (104886) 104886..105113 + 228 WP_000450520.1 toxin-antitoxin system antitoxin VapB Antitoxin Detail
N4686_RS24215 (105113) 105113..105511 + 399 WP_000911313.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
N4686_RS24220 (105520) 105520..107673 - 2154 WP_000009324.1 type IV conjugative transfer system coupling protein TraD -
N4686_RS24225 (107926) 107926..108657 - 732 WP_023565183.1 conjugal transfer complement resistance protein TraT -
N4686_RS24230 (108689) 108689..109186 - 498 WP_000605857.1 entry exclusion protein -
N4686_RS24235 (109202) 109202..112024 - 2823 WP_001007018.1 conjugal transfer mating-pair stabilization protein TraG -
N4686_RS24240 (112021) 112021..113394 - 1374 WP_001517790.1 conjugal transfer pilus assembly protein TraH -
N4686_RS24245 (113394) 113394..113774 - 381 WP_001389370.1 F-type conjugal transfer protein TrbF -
N4686_RS24250 (113761) 113761..114102 - 342 WP_001443031.1 P-type conjugative transfer protein TrbJ -
N4686_RS24255 (114032) 114032..114577 - 546 WP_000059851.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
N4686_RS24260 (114564) 114564..114848 - 285 WP_000624109.1 type-F conjugative transfer system pilin chaperone TraQ -
N4686_RS24265 (114929) 114929..115243 + 315 WP_001324103.1 hypothetical protein -
N4686_RS24270 (115245) 115245..115592 - 348 WP_001287910.1 conjugal transfer protein TrbA -
N4686_RS24275 (115608) 115608..116351 - 744 WP_001030393.1 type-F conjugative transfer system pilin assembly protein TraF -
N4686_RS24280 (116344) 116344..116601 - 258 WP_000864318.1 conjugal transfer protein TrbE -
N4686_RS24285 (116628) 116628..118436 - 1809 WP_000821841.1 type-F conjugative transfer system mating-pair stabilization protein TraN -
N4686_RS24290 (118433) 118433..119071 - 639 WP_000777700.1 type-F conjugative transfer system pilin assembly protein TrbC -
N4686_RS24295 (119080) 119080..120072 - 993 WP_000830183.1 conjugal transfer pilus assembly protein TraU -
N4686_RS24300 (120069) 120069..120701 - 633 WP_001203720.1 type-F conjugative transfer system protein TraW -
N4686_RS24305 (120698) 120698..121084 - 387 WP_000099686.1 type-F conjugative transfer system protein TrbI -
N4686_RS24310 (121081) 121081..123708 - 2628 WP_001064245.1 type IV secretion system protein TraC -
N4686_RS24315 (123868) 123868..124089 - 222 WP_001278689.1 conjugal transfer protein TraR -
N4686_RS24320 (124224) 124224..124739 - 516 WP_000809838.1 type IV conjugative transfer system lipoprotein TraV -
N4686_RS24325 (124736) 124736..124987 - 252 WP_001038342.1 conjugal transfer protein TrbG -
N4686_RS24330 (124999) 124999..125196 - 198 WP_001324648.1 conjugal transfer protein TrbD -
N4686_RS24335 (125183) 125183..125773 - 591 WP_001376242.1 conjugal transfer pilus-stabilizing protein TraP -
N4686_RS24340 (125763) 125763..127190 - 1428 WP_000146685.1 F-type conjugal transfer pilus assembly protein TraB -
N4686_RS24345 (127190) 127190..127918 - 729 WP_001230787.1 type-F conjugative transfer system secretin TraK -
N4686_RS24350 (127905) 127905..128471 - 567 WP_000399792.1 type IV conjugative transfer system protein TraE -
N4686_RS24355 (128493) 128493..128804 - 312 WP_000012106.1 type IV conjugative transfer system protein TraL -
N4686_RS24360 (128819) 128819..129184 - 366 WP_000994779.1 type IV conjugative transfer system pilin TraA -
N4686_RS24365 (129217) 129217..129618 - 402 WP_001369361.1 conjugal transfer relaxosome DNA-bindin protein TraY -
N4686_RS24370 (129711) 129711..130400 - 690 WP_000283385.1 conjugal transfer transcriptional regulator TraJ -
N4686_RS24375 (130587) 130587..130970 - 384 WP_001151524.1 conjugal transfer relaxosome DNA-binding protein TraM -
N4686_RS24380 (131303) 131303..131893 + 591 WP_001376243.1 hypothetical protein VF
N4686_RS24385 (132190) 132190..133011 - 822 WP_001234426.1 DUF932 domain-containing protein -
N4686_RS24390 (133129) 133129..133416 - 288 WP_000107535.1 hypothetical protein -
N4686_RS24395 (133441) 133441..133647 - 207 WP_000547968.1 hypothetical protein -
N4686_RS24400 (133717) 133717..133889 + 173 Protein_147 hypothetical protein -
N4686_RS24405 (133887) 133887..134117 - 231 WP_262930742.1 hypothetical protein -
N4686_RS24410 (134337) 134337..134462 - 126 WP_001372321.1 type I toxin-antitoxin system Hok family toxin Toxin Detail
N4686_RS24415 (134404) 134404..134553 - 150 Protein_150 plasmid maintenance protein Mok -
- (134539) 134539..134763 - 225 NuclAT_0 - -
- (134539) 134539..134763 - 225 NuclAT_0 - -
- (134539) 134539..134763 - 225 NuclAT_0 - -
- (134539) 134539..134763 - 225 NuclAT_0 - -
N4686_RS24420 (134575) 134575..134763 + 189 WP_001299721.1 hypothetical protein -
N4686_RS24425 (134732) 134732..135494 - 763 Protein_152 plasmid SOS inhibition protein A -
N4686_RS24430 (135491) 135491..135925 - 435 WP_000845936.1 conjugation system SOS inhibitor PsiB -
N4686_RS24435 (135980) 135980..136177 - 198 Protein_154 hypothetical protein -
N4686_RS24440 (136205) 136205..136438 - 234 WP_000005987.1 DUF905 family protein -
N4686_RS24445 (136506) 136506..137045 - 540 WP_000290840.1 single-stranded DNA-binding protein -
N4686_RS24450 (137071) 137071..137277 - 207 WP_000275856.1 hypothetical protein -
N4686_RS24455 (137347) 137347..137427 + 81 Protein_158 hypothetical protein -
N4686_RS24460 (137610) 137610..137779 - 170 Protein_159 hypothetical protein -
N4686_RS24465 (138373) 138373..139344 - 972 WP_000817028.1 ParB/RepB/Spo0J family plasmid partition protein -
N4686_RS24470 (139344) 139344..140510 - 1167 WP_001238646.1 hypothetical protein VF
N4686_RS24480 (141992) 141992..144193 - 2202 WP_000973520.1 Ferric aerobactin receptor VF
N4686_RS24485 (144219) 144219..145552 - 1334 Protein_164 L-lysine N6-monooxygenase VF
N4686_RS24490 (145549) 145549..147291 - 1743 WP_001015721.1 Aerobactin synthase VF
N4686_RS24495 (147291) 147291..148238 - 948 WP_000011910.1 N(6)-hydroxylysine O-acetyltransferase VF
N4686_RS24500 (148239) 148239..149963 - 1725 WP_000602863.1 N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase VF
N4686_RS24505 (150099) 150099..151292 + 1194 WP_000095526.1 MFS transporter -
N4686_RS24510 (151672) 151672..152052 - 381 WP_001318207.1 fluoride efflux transporter CrcB -
N4686_RS24515 (152393) 152393..152806 - 414 Protein_170 phosphopyruvate hydratase -
N4686_RS24520 (152804) 152804..153061 + 258 Protein_171 Tn3 family transposase -
N4686_RS24525 (153295) 153295..154152 - 858 WP_000968139.1 Manganese transport system membrane protein MntB ARG
N4686_RS24530 (154149) 154149..155006 - 858 WP_001101723.1 Manganese transport system membrane protein MntB ARG
N4686_RS24535 (155003) 155003..155830 - 828 WP_000983710.1 Manganese transport system ATP-binding protein MntB VF
N4686_RS24540 (155830) 155830..156744 - 915 WP_000949004.1 putative periplasmic iron-binding protein VF
N4686_RS24545 (157100) 157100..157797 + 698 WP_103215986.1 IS1 family transposase IS1S Transposase
N4686_RS24550 (157977) 157977..158490 - 514 Protein_177 DUF4113 domain-containing protein -
N4686_RS24555 (158551) 158551..158655 - 105 Protein_178 AAA family ATPase -
N4686_RS24560 (158657) 158657..158980 - 324 Protein_179 IS21 family transposase IS21 Transposase

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance