MGE detailed information
MGE type: Genomic_island MGE length: 10245 bp
Accession: NZ_CP121298 Location: 1194451..1204695 Organism: Salmonella enterica subsp. enterica strain KKP 3080 Replicon: chromosome
Accession: NZ_CP121298 Location: 1194451..1204695 Organism: Salmonella enterica subsp. enterica strain KKP 3080 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P1839_RS05760 (1189924) | 1189924..1191441 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| P1839_RS05765 (1191517) | 1191517..1192062 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| P1839_RS05770 (1192327) | 1192327..1193085 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| P1839_RS05780 (1193370) | 1193370..1194176 | - | 807 | WP_185609406.1 | DUF1460 domain-containing protein | - |
| P1839_RS05785 (1194451) | 1194451..1194702 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| P1839_RS05790 (1194879) | 1194879..1195106 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| P1839_RS05795 (1195106) | 1195106..1195504 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| P1839_RS05800 (1196310) | 1196310..1196846 | + | 537 | WP_278219242.1 | Attachment invasion locus protein | VF |
| P1839_RS05805 (1196893) | 1196893..1197525 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| P1839_RS05810 (1198244) | 1198244..1198828 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| P1839_RS05815 (1198948) | 1198948..1201437 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| P1839_RS05820 (1201478) | 1201478..1202221 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| P1839_RS05825 (1202218) | 1202218..1203294 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| P1839_RS05830 (1203438) | 1203438..1203950 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| P1839_RS05835 (1203937) | 1203937..1204695 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| P1839_RS05840 (1204905) | 1204905..1205861 | - | 957 | WP_278219245.1 | nickel/cobalt efflux protein RcnA | - |
| P1839_RS05845 (1205984) | 1205984..1206256 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| P1839_RS05850 (1206287) | 1206287..1207516 | - | 1230 | WP_000036837.1 | amino acid permease | - |
| P1839_RS05855 (1207658) | 1207658..1208113 | - | 456 | WP_017465480.1 | multidrug/biocide efflux PACE transporter | - |
| P1839_RS05860 (1208217) | 1208217..1209080 | + | 864 | WP_001270777.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.006 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.003 |