MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP121262 Location: 848171..859496 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain 013 Replicon: chromosome
Accession: NZ_CP121262 Location: 848171..859496 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain 013 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P8621_RS04075 (843617) | 843617..844715 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| P8621_RS04080 (844725) | 844725..846242 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| P8621_RS04085 (846318) | 846318..846863 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| P8621_RS04090 (847128) | 847128..847886 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| P8621_RS04100 (848171) | 848171..848977 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| P8621_RS04105 (849252) | 849252..849503 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| P8621_RS04110 (849680) | 849680..849907 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| P8621_RS04115 (849907) | 849907..850305 | + | 399 | WP_080247813.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| P8621_RS04120 (851111) | 851111..851647 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| P8621_RS04125 (851694) | 851694..852326 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| P8621_RS04130 (853045) | 853045..853629 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| P8621_RS04135 (853749) | 853749..856238 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| P8621_RS04140 (856279) | 856279..857022 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| P8621_RS04145 (857019) | 857019..858095 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| P8621_RS04150 (858239) | 858239..858751 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| P8621_RS04155 (858738) | 858738..859496 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| P8621_RS04160 (859706) | 859706..860572 | - | 867 | WP_000503682.1 | nickel/cobalt efflux protein RcnA | - |
| P8621_RS04165 (860694) | 860694..860966 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| P8621_RS04170 (860997) | 860997..862226 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| P8621_RS04175 (862368) | 862368..862823 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| P8621_RS04180 (862927) | 862927..863790 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |