MGE detailed information
MGE type: Conjugative plasmid MGE length: 106531 bp
Accession: NZ_CP119580 Location: 1..106531 Organism: Escherichia coli strain C012_chr Replicon: plasmid pEC012-3
Accession: NZ_CP119580 Location: 1..106531 Organism: Escherichia coli strain C012_chr Replicon: plasmid pEC012-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P1J04_RS25010 (371) | 371..1160 | + | 790 | Protein_1 | winged helix-turn-helix domain-containing protein | - |
| P1J04_RS25015 (1160) | 1160..1678 | + | 519 | WP_014839979.1 | FidL-like protein | - |
| P1J04_RS25020 (1683) | 1683..2102 | - | 420 | WP_276131594.1 | Glutathione transferase FosA | ARG |
| P1J04_RS25025 (2497) | 2497..3202 | + | 706 | Protein_4 | IS6-like element IS26 family transposase | - |
| P1J04_RS25030 (3420) | 3420..3734 | - | 315 | Protein_5 | hypothetical protein | - |
| P1J04_RS25035 (3790) | 3790..4392 | - | 603 | WP_000517695.1 | ProQ/FINO family protein | - |
| P1J04_RS25040 (4746) | 4746..6092 | + | 1347 | WP_001132032.1 | protein YagA | - |
| P1J04_RS25045 (6371) | 6371..8251 | + | 1881 | WP_001283341.1 | colicin Ia central receptor-binding domain-containing protein | - |
| P1J04_RS25050 (8269) | 8269..8616 | - | 348 | WP_000762570.1 | colicin 1B immunity protein | - |
| P1J04_RS25055 (8735) | 8735..9083 | + | 349 | Protein_10 | DUF6404 family protein | - |
| P1J04_RS25060 (9103) | 9103..9693 | - | 591 | WP_000194553.1 | hypothetical protein | - |
| P1J04_RS25065 (9693) | 9693..9950 | - | 258 | WP_000371888.1 | hypothetical protein | - |
| P1J04_RS25070 (10301) | 10301..11302 | + | 1002 | WP_000774874.1 | DUF4238 domain-containing protein | - |
| P1J04_RS25075 (11478) | 11478..11822 | - | 345 | WP_000793307.1 | hypothetical protein | - |
| P1J04_RS25080 (12321) | 12321..12575 | - | 255 | WP_000678527.1 | hypothetical protein | - |
| P1J04_RS25085 (12620) | 12620..13546 | - | 927 | WP_001290416.1 | hypothetical protein | - |
| P1J04_RS25090 (13778) | 13778..15041 | + | 1264 | Protein_17 | IS1380 family transposase ISEcp1 | Transposase |
| P1J04_RS25095 (15294) | 15294..16169 | + | 876 | WP_031942271.1 | Beta-lactamase CTX-M-1 | ARG |
| P1J04_RS25100 (16216) | 16216..16560 | - | 345 | Protein_19 | WbuC family cupin fold metalloprotein | - |
| P1J04_RS25105 (16685) | 16685..16927 | - | 243 | WP_000151456.1 | hypothetical protein | - |
| P1J04_RS25110 (17181) | 17181..17677 | - | 497 | Protein_21 | hypothetical protein | - |
| P1J04_RS25115 (17836) | 17836..18354 | - | 519 | Protein_22 | J domain-containing protein | - |
| P1J04_RS25120 (18758) | 18758..19087 | - | 330 | WP_000855119.1 | hypothetical protein | - |
| P1J04_RS25125 (19902) | 19902..20315 | + | 414 | WP_000465036.1 | hypothetical protein | - |
| P1J04_RS25130 (20317) | 20317..21096 | + | 780 | WP_001164198.1 | site-specific integrase | - |
| P1J04_RS25135 (21276) | 21276..21920 | + | 645 | WP_001144036.1 | ParA family protein | - |
| P1J04_RS25140 (22007) | 22007..22312 | + | 306 | WP_021577244.1 | hypothetical protein | - |
| P1J04_RS25145 (22729) | 22729..23709 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| P1J04_RS25150 (23702) | 23702..24118 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| P1J04_RS25155 (24120) | 24120..25394 | - | 1275 | WP_000457492.1 | Y-family DNA polymerase | - |
| P1J04_RS25160 (25394) | 25394..25831 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| P1J04_RS25165 (25828) | 25828..26076 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| P1J04_RS25170 (26494) | 26494..27396 | + | 903 | WP_072748703.1 | DUF1281 domain-containing protein | - |
| P1J04_RS25175 (27400) | 27400..27705 | + | 306 | WP_015058890.1 | hypothetical protein | - |
| P1J04_RS25180 (27781) | 27781..28464 | + | 684 | WP_030003447.1 | DNA methylase | - |
| P1J04_RS25185 (28465) | 28465..28686 | + | 222 | WP_001104885.1 | hypothetical protein | - |
| P1J04_RS25190 (28667) | 28667..29133 | + | 467 | Protein_37 | DUF1380 family protein | - |
| P1J04_RS25195 (29184) | 29184..29954 | + | 771 | WP_001434682.1 | hypothetical protein | - |
| P1J04_RS25200 (30371) | 30371..30796 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| P1J04_RS25205 (30843) | 30843..31265 | + | 423 | WP_000271734.1 | DUF1380 family protein | - |
| P1J04_RS25210 (31262) | 31262..31453 | + | 192 | WP_031942274.1 | hypothetical protein | - |
| P1J04_RS25215 (31731) | 31731..33398 | - | 1668 | WP_012372796.1 | group II intron reverse transcriptase/maturase | - |
| P1J04_RS25220 (34129) | 34129..34197 | - | 69 | Protein_43 | pilus protein | - |
| P1J04_RS25225 (34566) | 34566..35093 | + | 528 | WP_029391983.1 | single-stranded DNA-binding protein | - |
| P1J04_RS25230 (35151) | 35151..35384 | + | 234 | WP_021534894.1 | DUF905 domain-containing protein | - |
| P1J04_RS25235 (35448) | 35448..37406 | + | 1959 | WP_031942276.1 | ParB/RepB/Spo0J family partition protein | - |
| P1J04_RS25240 (37461) | 37461..37895 | + | 435 | WP_001535709.1 | conjugation system SOS inhibitor PsiB | - |
| P1J04_RS25245 (37892) | 37892..38611 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| P1J04_RS25250 (38608) | 38608..39204 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| P1J04_RS25255 (39667) | 39667..40167 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| P1J04_RS25260 (40896) | 40896..41330 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| P1J04_RS25265 (41424) | 41424..41690 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| P1J04_RS25270 (41755) | 41755..42657 | + | 903 | WP_030003452.1 | ISNCY family transposase ISRor2 | VF |
| P1J04_RS25275 (42657) | 42657..42914 | + | 258 | WP_016231861.1 | hypothetical protein | VF |
| P1J04_RS25280 (42945) | 42945..43196 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| P1J04_RS25285 (43230) | 43230..43532 | - | 303 | WP_030003453.1 | hypothetical protein | - |
| P1J04_RS25290 (43776) | 43776..44624 | + | 849 | WP_001077047.1 | DUF4942 domain-containing protein | - |
| P1J04_RS25295 (44709) | 44709..45044 | - | 336 | WP_000157098.1 | hypothetical protein | - |
| P1J04_RS25300 (45278) | 45278..45610 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| P1J04_RS25305 (45621) | 45621..48320 | + | 2700 | WP_001306778.1 | hypothetical protein | Relaxase |
| P1J04_RS25310 (48357) | 48357..50648 | - | 2292 | WP_001289276.1 | F-type conjugative transfer protein TrbC | - |
| P1J04_RS25315 (50641) | 50641..51711 | - | 1071 | WP_000151582.1 | IncI1-type conjugal transfer protein TrbB | - |
| P1J04_RS25320 (51730) | 51730..52938 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (53118) | 53118..53180 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (53118) | 53118..53180 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (53118) | 53118..53180 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (53118) | 53118..53180 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| P1J04_RS25325 (53230) | 53230..53382 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| P1J04_RS25330 (53494) | 53494..53745 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| P1J04_RS25335 (54244) | 54244..54339 | + | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| P1J04_RS25340 (54404) | 54404..54580 | - | 177 | WP_001054897.1 | hypothetical protein | - |
| P1J04_RS25345 (54972) | 54972..55181 | + | 210 | WP_039025903.1 | HEAT repeat domain-containing protein | - |
| P1J04_RS25350 (55253) | 55253..55915 | - | 663 | WP_000644796.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| P1J04_RS25355 (55986) | 55986..58154 | - | 2169 | WP_000698354.1 | DotA/TraY family protein | - |
| P1J04_RS25360 (58251) | 58251..58835 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| P1J04_RS25365 (58864) | 58864..60066 | - | 1203 | WP_001385654.1 | IncI1-type conjugal transfer protein TraW | - |
| P1J04_RS25370 (60033) | 60033..60647 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| P1J04_RS25375 (60647) | 60647..63691 | - | 3045 | WP_001024780.1 | IncI1-type conjugal transfer protein TraU | - |
| P1J04_RS25380 (63781) | 63781..64581 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| P1J04_RS25385 (64565) | 64565..64753 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| P1J04_RS25390 (64817) | 64817..65221 | - | 405 | WP_000086958.1 | IncI1-type conjugal transfer protein TraR | - |
| P1J04_RS25395 (65272) | 65272..65799 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| P1J04_RS25400 (65799) | 65799..66503 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| P1J04_RS25405 (66503) | 66503..67792 | - | 1290 | WP_001272003.1 | conjugal transfer protein TraO | - |
| P1J04_RS25410 (67795) | 67795..68778 | - | 984 | WP_001191877.1 | hypothetical protein | VF |
| P1J04_RS25415 (68789) | 68789..69481 | - | 693 | WP_000138550.1 | DotI/IcmL family type IV secretion protein | - |
| P1J04_RS25420 (69478) | 69478..69825 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| P1J04_RS25425 (69843) | 69843..73610 | - | 3768 | WP_254496987.1 | DUF5710 domain-containing protein | - |
| P1J04_RS25430 (73700) | 73700..74251 | - | 552 | WP_000014583.1 | Phospholipase D | VF |
| P1J04_RS25435 (74266) | 74266..74556 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| P1J04_RS25440 (74553) | 74553..75701 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| P1J04_RS25445 (75698) | 75698..76516 | - | 819 | WP_000646098.1 | hypothetical protein | VF |
| P1J04_RS25450 (76513) | 76513..76971 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| P1J04_RS25455 (77366) | 77366..77950 | - | 585 | WP_031942280.1 | histidine phosphatase family protein | - |
| P1J04_RS25460 (78010) | 78010..79212 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| P1J04_RS25465 (79298) | 79298..80122 | - | 825 | WP_001238927.1 | conjugal transfer protein TraE | - |
| P1J04_RS25470 (80273) | 80273..81427 | - | 1155 | WP_001139958.1 | site-specific integrase | - |
| P1J04_RS25475 (82619) | 82619..82867 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| P1J04_RS25480 (82864) | 82864..84156 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| P1J04_RS25485 (84156) | 84156..84812 | - | 657 | WP_001193554.1 | hypothetical protein | VF |
| P1J04_RS25490 (84797) | 84797..85357 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| P1J04_RS25495 (85367) | 85367..85981 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| P1J04_RS25500 (85999) | 85999..87096 | - | 1098 | WP_001208805.1 | hypothetical protein | VF |
| P1J04_RS25505 (87109) | 87109..88662 | - | 1554 | WP_000362202.1 | hypothetical protein | VF |
| P1J04_RS25510 (88673) | 88673..89125 | - | 453 | WP_001247334.1 | hypothetical protein | VF |
| P1J04_RS25515 (89112) | 89112..90407 | - | 1296 | WP_000752772.1 | hypothetical protein | VF |
| P1J04_RS25520 (90400) | 90400..92082 | - | 1683 | WP_000748143.1 | hypothetical protein | VF |
| P1J04_RS25525 (92096) | 92096..92533 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| P1J04_RS25530 (92533) | 92533..93600 | - | 1068 | WP_001302629.1 | hypothetical protein | VF |
| P1J04_RS25535 (94224) | 94224..94520 | - | 297 | WP_000494779.1 | hypothetical protein | - |
| P1J04_RS25540 (94696) | 94696..94950 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| P1J04_RS25545 (95112) | 95112..95663 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| P1J04_RS25550 (95836) | 95836..96519 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| P1J04_RS25555 (96773) | 96773..97306 | - | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| P1J04_RS25560 (97748) | 97748..98035 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| P1J04_RS25565 (97953) | 97953..98183 | - | 231 | WP_228772074.1 | ash family protein | - |
| P1J04_RS25570 (99189) | 99189..100220 | + | 1032 | WP_000907870.1 | plasmid replication initiator RepA | - |
| P1J04_RS25575 (100916) | 100916..101074 | + | 159 | WP_000841008.1 | hypothetical protein | - |
| P1J04_RS25580 (101129) | 101129..101398 | + | 270 | WP_000079941.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| P1J04_RS25585 (101398) | 101398..101676 | + | 279 | WP_244442846.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| P1J04_RS25590 (101716) | 101716..102564 | + | 849 | WP_001057996.1 | 3'-5' exonuclease | - |
| P1J04_RS25595 (102681) | 102681..103154 | + | 474 | WP_001334658.1 | hypothetical protein | - |
| P1J04_RS25600 (103634) | 103634..103900 | - | 267 | WP_000955263.1 | hypothetical protein | - |
| P1J04_RS25605 (103900) | 103900..104085 | - | 186 | Protein_120 | hypothetical protein | - |
| P1J04_RS25610 (104118) | 104118..105632 | - | 1515 | Protein_121 | Tn3-like element TnAs1 family transposase | - |
| P1J04_RS25615 (105698) | 105698..106402 | + | 705 | WP_276131593.1 | IS6 family transposase IS26 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli | Conjugative plasmid | TA6370, TA30448 | NC_023329 | 1..104399 | 0.007 |