MGE detailed information
MGE type: Genomic_island MGE length: 31881 bp
Accession: NZ_CP117962 Location: 3374655..3406535 Organism: Escherichia coli strain JM109 Replicon: chromosome
Accession: NZ_CP117962 Location: 3374655..3406535 Organism: Escherichia coli strain JM109 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PT299_RS17570 (3370839) | 3370839..3372107 | - | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| PT299_RS17575 (3372127) | 3372127..3373104 | - | 978 | WP_000993126.1 | glutarate dioxygenase GlaH | - |
| PT299_RS17580 (3373440) | 3373440..3375692 | - | 2253 | Protein_3181 | alpha-amylase family glycosyl hydrolase | - |
| PT299_RS17590 (3377078) | 3377078..3378451 | + | 1374 | Protein_3182 | DUF5507 domain-containing protein | - |
| PT299_RS17595 (3378845) | 3378845..3379024 | + | 180 | WP_087676347.1 | DNA invertase | - |
| PT299_RS17600 (3379179) | 3379179..3379298 | + | 120 | WP_001120794.1 | hypothetical protein | - |
| PT299_RS17605 (3379363) | 3379363..3383943 | + | 4581 | WP_010723187.1 | putative autotransporter | VF |
| PT299_RS17610 (3384307) | 3384307..3384636 | - | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| PT299_RS17615 (3384657) | 3384657..3384974 | - | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| PT299_RS17620 (3385012) | 3385012..3385212 | - | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| PT299_RS17625 (3385221) | 3385221..3385703 | - | 483 | WP_001407480.1 | RadC family protein | - |
| PT299_RS17630 (3385712) | 3385712..3386170 | - | 459 | WP_000211841.1 | antirestriction protein | - |
| PT299_RS17635 (3386273) | 3386273..3386457 | - | 185 | Protein_3191 | DUF905 family protein | - |
| PT299_RS17640 (3387068) | 3387068..3388771 | - | 1704 | WP_000896263.1 | protein YfjW | - |
| PT299_RS17645 (3388913) | 3388913..3389922 | + | 1010 | Protein_3193 | arsenic transporter | - |
| PT299_RS17650 (3389935) | 3389935..3390087 | + | 153 | Protein_3194 | arsenate reductase | - |
| PT299_RS17655 (3390474) | 3390474..3390941 | - | 468 | WP_000702495.1 | protein YfjT | - |
| PT299_RS17660 (3390965) | 3390965..3391408 | - | 444 | WP_000824222.1 | lipoprotein YfjS | - |
| PT299_RS17665 (3391408) | 3391408..3391644 | - | 237 | WP_001144029.1 | protein YpjK | - |
| PT299_RS17670 (3391685) | 3391685..3392386 | - | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| PT299_RS17675 (3392603) | 3392603..3393424 | - | 822 | WP_000197391.1 | DUF932 domain-containing protein | - |
| PT299_RS17680 (3393516) | 3393516..3394379 | - | 864 | WP_000787597.1 | GTPase family protein | - |
| PT299_RS17685 (3394734) | 3394734..3395105 | - | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| PT299_RS17690 (3395098) | 3395098..3396171 | - | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| PT299_RS17695 (3396313) | 3396313..3396576 | + | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| PT299_RS17700 (3396936) | 3396936..3398552 | + | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| PT299_RS17705 (3398549) | 3398549..3400738 | + | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| PT299_RS17710 (3400916) | 3400916..3401542 | - | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| PT299_RS17715 (3401695) | 3401695..3403104 | - | 1410 | WP_000481742.1 | YfjI family protein | - |
| PT299_RS17720 (3403233) | 3403233..3403445 | - | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| PT299_RS17725 (3403489) | 3403489..3404445 | + | 957 | WP_000510827.1 | protein YfjH | - |
| PT299_RS17730 (3404689) | 3404689..3405930 | - | 1242 | WP_000101723.1 | Prophage integrase IntA ; Integrase | Integrase |
| PT299_RS17740 (3406711) | 3406711..3407193 | - | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| PT299_RS17745 (3407364) | 3407364..3407801 | + | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| PT299_RS17750 (3407791) | 3407791..3408081 | + | 291 | WP_001117838.1 | RnfH family protein | - |
| PT299_RS17755 (3408143) | 3408143..3408484 | - | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| PT299_RS17760 (3408633) | 3408633..3410294 | - | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| PT299_RS17765 (3410380) | 3410380..3411258 | - | 879 | WP_001059169.1 | NAD(+) kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0 |