MGE detailed information
MGE type: Conjugative plasmid MGE length: 137545 bp
Accession: NZ_CP117716 Location: 1..137545 Organism: Escherichia coli strain PBS4 Replicon: plasmid pPBS4
Accession: NZ_CP117716 Location: 1..137545 Organism: Escherichia coli strain PBS4 Replicon: plasmid pPBS4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PTA50_RS24115 (151) | 151..1317 | + | 1167 | WP_001238646.1 | Sporulation initiation inhibitor protein Soj | VF |
| PTA50_RS24120 (1317) | 1317..2288 | + | 972 | WP_112917248.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| PTA50_RS24125 (2925) | 2925..3094 | + | 170 | Protein_2 | hypothetical protein | - |
| PTA50_RS24130 (3277) | 3277..3357 | - | 81 | Protein_3 | hypothetical protein | - |
| PTA50_RS24135 (3427) | 3427..3633 | + | 207 | WP_000275856.1 | hypothetical protein | - |
| PTA50_RS24140 (3659) | 3659..4198 | + | 540 | WP_000290840.1 | single-stranded DNA-binding protein | - |
| PTA50_RS24145 (4266) | 4266..4499 | + | 234 | WP_000005987.1 | DUF905 family protein | - |
| PTA50_RS24150 (4527) | 4527..4724 | + | 198 | Protein_7 | hypothetical protein | - |
| PTA50_RS24155 (4779) | 4779..5213 | + | 435 | WP_000845936.1 | conjugation system SOS inhibitor PsiB | - |
| PTA50_RS24160 (5210) | 5210..5972 | + | 763 | Protein_9 | plasmid SOS inhibition protein A | - |
| PTA50_RS24165 (5941) | 5941..6129 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - (5941) | 5941..6165 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (5941) | 5941..6165 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (5941) | 5941..6165 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (5941) | 5941..6165 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| PTA50_RS24170 (6151) | 6151..6300 | + | 150 | Protein_11 | plasmid maintenance protein Mok | - |
| PTA50_RS24175 (6242) | 6242..6367 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| PTA50_RS24180 (6587) | 6587..6817 | + | 231 | WP_071586998.1 | hypothetical protein | - |
| PTA50_RS24185 (6815) | 6815..6987 | - | 173 | Protein_14 | hypothetical protein | - |
| PTA50_RS24190 (7057) | 7057..7263 | + | 207 | WP_000547968.1 | hypothetical protein | - |
| PTA50_RS24195 (7288) | 7288..7575 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| PTA50_RS24200 (7693) | 7693..8514 | + | 822 | WP_001234426.1 | DUF932 domain-containing protein | - |
| PTA50_RS24205 (8811) | 8811..9413 | - | 603 | WP_000243712.1 | hypothetical protein | VF |
| PTA50_RS24210 (9734) | 9734..10117 | + | 384 | WP_001151524.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| PTA50_RS24215 (10304) | 10304..10993 | + | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| PTA50_RS24220 (11086) | 11086..11487 | + | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| PTA50_RS24225 (11520) | 11520..11885 | + | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| PTA50_RS24230 (11900) | 11900..12211 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| PTA50_RS24235 (12233) | 12233..12799 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| PTA50_RS24240 (12786) | 12786..13514 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| PTA50_RS24245 (13514) | 13514..14941 | + | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| PTA50_RS24250 (14931) | 14931..15521 | + | 591 | WP_001376242.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| PTA50_RS24255 (15508) | 15508..15705 | + | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| PTA50_RS24260 (15717) | 15717..15968 | + | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| PTA50_RS24265 (15965) | 15965..16480 | + | 516 | WP_000809838.1 | type IV conjugative transfer system lipoprotein TraV | - |
| PTA50_RS24270 (16615) | 16615..16836 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| PTA50_RS24275 (16996) | 16996..19623 | + | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| PTA50_RS24280 (19620) | 19620..20006 | + | 387 | WP_000099686.1 | type-F conjugative transfer system protein TrbI | - |
| PTA50_RS24285 (20003) | 20003..20635 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| PTA50_RS24290 (20632) | 20632..21624 | + | 993 | WP_273792119.1 | conjugal transfer pilus assembly protein TraU | - |
| PTA50_RS24295 (21633) | 21633..22271 | + | 639 | WP_000777700.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| PTA50_RS24300 (22268) | 22268..24076 | + | 1809 | WP_000821841.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| PTA50_RS24305 (24103) | 24103..24360 | + | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| PTA50_RS24310 (24353) | 24353..25096 | + | 744 | WP_001030393.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| PTA50_RS24315 (25112) | 25112..25459 | + | 348 | WP_001287910.1 | conjugal transfer protein TrbA | - |
| PTA50_RS24320 (25461) | 25461..25775 | - | 315 | WP_001324103.1 | hypothetical protein | - |
| PTA50_RS24325 (25856) | 25856..26140 | + | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| PTA50_RS24330 (26127) | 26127..26672 | + | 546 | WP_000059851.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| PTA50_RS24335 (26602) | 26602..26943 | + | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| PTA50_RS24340 (26930) | 26930..27310 | + | 381 | WP_001389370.1 | F-type conjugal transfer protein TrbF | - |
| PTA50_RS24345 (27310) | 27310..28683 | + | 1374 | WP_001517790.1 | conjugal transfer pilus assembly protein TraH | - |
| PTA50_RS24350 (28680) | 28680..31502 | + | 2823 | WP_001007018.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| PTA50_RS24355 (31518) | 31518..32015 | + | 498 | WP_000605857.1 | entry exclusion protein | - |
| PTA50_RS24360 (32047) | 32047..32778 | + | 732 | WP_023565183.1 | conjugal transfer complement resistance protein TraT | - |
| PTA50_RS24365 (32995) | 32995..35148 | + | 2154 | WP_000009324.1 | type IV conjugative transfer system coupling protein TraD | - |
| PTA50_RS24370 (35157) | 35157..35555 | - | 399 | WP_000911313.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PTA50_RS24375 (35555) | 35555..35782 | - | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | - |
| PTA50_RS24380 (35864) | 35864..41134 | + | 5271 | WP_000986962.1 | Multifunctional conjugation protein TraI | Relaxase |
| PTA50_RS24385 (41154) | 41154..41900 | + | 747 | WP_000205749.1 | conjugal transfer pilus acetylase TraX | - |
| PTA50_RS24390 (41959) | 41959..42819 | + | 861 | WP_273792132.1 | putative protein YcjY | VF |
| PTA50_RS24395 (42922) | 42922..43482 | + | 561 | WP_112917249.1 | fertility inhibition protein FinO | - |
| PTA50_RS24400 (43618) | 43618..43830 | + | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| PTA50_RS24405 (44076) | 44076..44150 | + | 75 | Protein_58 | endonuclease | - |
| - (44406) | 44406..44467 | - | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (44406) | 44406..44467 | - | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (44406) | 44406..44467 | - | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (44406) | 44406..44467 | - | 62 | NuclAT_1 | - | Antitoxin Detail |
| PTA50_RS24410 (44511) | 44511..44660 | + | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| PTA50_RS24415 (44944) | 44944..45201 | + | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| PTA50_RS24420 (45218) | 45218..45469 | - | 252 | WP_223195197.1 | replication protein RepA | - |
| PTA50_RS24425 (45460) | 45460..45507 | + | 48 | WP_229471593.1 | hypothetical protein | - |
| PTA50_RS24430 (45500) | 45500..45982 | + | 483 | WP_001273588.1 | hypothetical protein | - |
| PTA50_RS24435 (45975) | 45975..46832 | + | 858 | WP_000774297.1 | incFII family plasmid replication initiator RepA | - |
| PTA50_RS24440 (47533) | 47533..47673 | + | 141 | WP_001333237.1 | hypothetical protein | - |
| PTA50_RS24445 (47771) | 47771..48424 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| PTA50_RS24450 (48517) | 48517..48774 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| PTA50_RS24455 (48707) | 48707..49108 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| PTA50_RS24460 (49357) | 49357..49772 | + | 416 | Protein_69 | IS1-like element IS1B family transposase | - |
| PTA50_RS24465 (49808) | 49808..50353 | - | 546 | Protein_70 | Tn3 family transposase TnpA_Tn3 | Transposase |
| PTA50_RS24470 (50419) | 50419..51123 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PTA50_RS24475 (51189) | 51189..52703 | + | 1515 | Protein_72 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| PTA50_RS24480 (52854) | 52854..53714 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| PTA50_RS24485 (53897) | 53897..54454 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| PTA50_RS24490 (54618) | 54618..55659 | + | 1042 | Protein_75 | Tn3 family transposase TnpA_Tn3 | Transposase |
| PTA50_RS24495 (56029) | 56029..56469 | + | 441 | WP_025732385.1 | GNAT family N-acetyltransferase | - |
| PTA50_RS24500 (56400) | 56400..57599 | - | 1200 | WP_025732387.1 | Tetracycline resistance protein, class C | ARG |
| PTA50_RS24505 (57705) | 57705..58355 | + | 651 | WP_012850383.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| PTA50_RS24510 (58397) | 58397..58639 | - | 243 | WP_000844627.1 | transposase | - |
| PTA50_RS24515 (59026) | 59026..59862 | - | 837 | WP_000480972.1 | hypothetical protein | ARG |
| PTA50_RS24520 (59862) | 59862..60665 | - | 804 | WP_001082320.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| PTA50_RS24525 (60726) | 60726..61541 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| PTA50_RS24530 (62183) | 62183..62887 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| PTA50_RS24535 (63003) | 63003..63638 | + | 636 | WP_001253263.1 | DUF3363 domain-containing protein | - |
| PTA50_RS24540 (63855) | 63855..65069 | + | 1215 | WP_000214121.1 | Bicyclomycin resistance protein | ARG |
| PTA50_RS24545 (65097) | 65097..65402 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| PTA50_RS24550 (65514) | 65514..67007 | + | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| PTA50_RS24555 (67295) | 67295..67999 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| PTA50_RS24560 (68371) | 68371..68820 | - | 450 | WP_039021304.1 | hypothetical protein | - |
| PTA50_RS24565 (68831) | 68831..69370 | - | 540 | WP_039021305.1 | hypothetical protein | - |
| PTA50_RS24570 (70043) | 70043..70747 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| PTA50_RS24575 (70812) | 70812..71426 | - | 615 | Protein_92 | Bcr/CflA family efflux MFS transporter | - |
| PTA50_RS24580 (71747) | 71747..72199 | - | 453 | WP_000237816.1 | NAD(+)--rifampin ADP-ribosyltransferase Arr-2 | - |
| PTA50_RS24585 (72372) | 72372..73484 | + | 1113 | WP_024166810.1 | class 1 integron integrase IntI1 | - |
| PTA50_RS24590 (73430) | 73430..74134 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PTA50_RS24595 (75022) | 75022..75270 | + | 249 | Protein_96 | IS1380 family transposase ISEcp1 | Transposase |
| PTA50_RS24600 (75273) | 75273..75359 | + | 87 | Protein_97 | hypothetical protein | - |
| PTA50_RS24605 (75390) | 75390..75731 | + | 342 | WP_004202492.1 | Multiple antibiotic resistance protein MarA | VF |
| PTA50_RS24610 (75749) | 75749..75997 | - | 249 | WP_065809026.1 | IS6 family transposase IS15DII | Transposase |
| PTA50_RS24615 (76289) | 76289..76498 | - | 210 | Protein_100 | IS6 family transposase IS15DII | Transposase |
| PTA50_RS24620 (76564) | 76564..77907 | + | 1344 | Protein_101 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| PTA50_RS24625 (77958) | 77958..78663 | - | 706 | Protein_102 | IS6 family transposase IS15DII | Transposase |
| PTA50_RS24630 (78729) | 78729..79013 | + | 285 | Protein_103 | IS6 family transposase IS26 | Transposase |
| PTA50_RS24635 (79203) | 79203..80018 | - | 816 | WP_000018329.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| PTA50_RS24640 (80169) | 80169..80873 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PTA50_RS24645 (81321) | 81321..82333 | - | 1013 | Protein_106 | class 1 integron integrase IntI1 | - |
| PTA50_RS24650 (82489) | 82489..82962 | + | 474 | WP_004201280.1 | Dihydrofolate reductase type 1 | ARG |
| PTA50_RS24655 (83032) | 83032..83736 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PTA50_RS24660 (83991) | 83991..84866 | + | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| PTA50_RS24665 (84913) | 84913..85206 | - | 294 | WP_116961751.1 | WbuC family cupin fold metalloprotein | - |
| PTA50_RS24670 (85271) | 85271..87490 | + | 2220 | Protein_111 | Tn3 family transposase TnpA_Tn3 | Transposase |
| PTA50_RS24675 (87567) | 87567..88271 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PTA50_RS24680 (88324) | 88324..88644 | - | 321 | Protein_113 | NAD(P)H-dependent oxidoreductase | - |
| PTA50_RS24685 (88805) | 88805..89128 | - | 324 | WP_001175594.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| PTA50_RS24690 (89233) | 89233..90312 | + | 1080 | WP_001089727.1 | permease | - |
| PTA50_RS24695 (90605) | 90605..91222 | - | 618 | WP_000521603.1 | ProQ/FINO family protein | - |
| PTA50_RS24700 (91510) | 91510..92970 | - | 1461 | WP_202745975.1 | AAA family ATPase | - |
| PTA50_RS24705 (93233) | 93233..93823 | - | 591 | WP_000194575.1 | hypothetical protein | - |
| PTA50_RS24710 (93823) | 93823..94080 | - | 258 | WP_000343085.1 | hypothetical protein | - |
| PTA50_RS24715 (94434) | 94434..96572 | + | 2139 | WP_000350638.1 | AAA family ATPase | - |
| PTA50_RS24720 (96734) | 96734..97150 | - | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PTA50_RS24725 (97147) | 97147..97377 | - | 231 | WP_001261287.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| PTA50_RS24730 (97673) | 97673..97963 | + | 291 | WP_000111771.1 | hypothetical protein | - |
| PTA50_RS24735 (97953) | 97953..98852 | + | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| PTA50_RS24740 (98902) | 98902..101127 | - | 2226 | WP_000698737.1 | P-loop NTPase fold protein | - |
| PTA50_RS24745 (101129) | 101129..102217 | - | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| PTA50_RS24750 (102762) | 102762..103112 | + | 351 | WP_000493379.1 | hypothetical protein | - |
| PTA50_RS24755 (103156) | 103156..103845 | + | 690 | WP_000796228.1 | hypothetical protein | - |
| PTA50_RS24760 (103842) | 103842..104633 | + | 792 | WP_000016493.1 | site-specific integrase | - |
| PTA50_RS24765 (104811) | 104811..105164 | + | 354 | WP_000864812.1 | colicin M immunity protein | - |
| PTA50_RS24770 (105214) | 105214..106029 | - | 816 | WP_001312845.1 | lipid II-degrading bacteriocin colicin M | - |
| PTA50_RS24775 (106273) | 106273..106800 | + | 528 | WP_000203272.1 | colicin B immunity protein | - |
| PTA50_RS24780 (106818) | 106818..106985 | - | 168 | Protein_133 | colicin-B | - |
| PTA50_RS24785 (107158) | 107158..107361 | + | 204 | Protein_134 | hypothetical protein | - |
| PTA50_RS24790 (107903) | 107903..108139 | + | 237 | WP_014640552.1 | colicin V immunity protein | - |
| PTA50_RS24795 (108117) | 108117..108314 | + | 198 | Protein_136 | colicin V | - |
| PTA50_RS24805 (109085) | 109085..109353 | + | 269 | Protein_138 | IS3 family transposase ISLad1 | Transposase |
| PTA50_RS24815 (110853) | 110853..111032 | + | 180 | Protein_140 | integrase core domain-containing protein | - |
| PTA50_RS24820 (112329) | 112329..113282 | + | 954 | WP_000280980.1 | Protease 7 | VF |
| PTA50_RS24825 (113715) | 113715..114824 | + | 1110 | WP_000771475.1 | SDR family oxidoreductase | - |
| PTA50_RS24830 (114893) | 114893..115795 | + | 903 | WP_001312822.1 | hypothetical protein | VF |
| PTA50_RS24835 (116169) | 116169..116357 | + | 189 | WP_001312821.1 | hypothetical protein | - |
| PTA50_RS24840 (116478) | 116478..117218 | + | 741 | WP_001066954.1 | tyrosine-type recombinase/integrase | - |
| PTA50_RS24845 (117503) | 117503..118480 | - | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| PTA50_RS24850 (119226) | 119226..119549 | + | 324 | Protein_147 | IS21 family transposase IS21 | Transposase |
| PTA50_RS24855 (119551) | 119551..119655 | + | 105 | Protein_148 | AAA family ATPase | - |
| PTA50_RS24860 (119716) | 119716..120229 | + | 514 | Protein_149 | DUF4113 domain-containing protein | - |
| PTA50_RS24870 (121462) | 121462..122376 | + | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| PTA50_RS24875 (122376) | 122376..123203 | + | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| PTA50_RS24880 (123200) | 123200..124057 | + | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| PTA50_RS24885 (124054) | 124054..124911 | + | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| PTA50_RS24890 (125145) | 125145..125402 | - | 258 | Protein_155 | Tn3 family transposase | - |
| PTA50_RS24895 (125400) | 125400..125813 | + | 414 | Protein_156 | phosphopyruvate hydratase | - |
| PTA50_RS24900 (126154) | 126154..126534 | + | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| PTA50_RS24905 (126914) | 126914..128107 | - | 1194 | WP_000095526.1 | MFS transporter | - |
| PTA50_RS24910 (128243) | 128243..129967 | + | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| PTA50_RS24915 (129968) | 129968..130915 | + | 948 | WP_000011910.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| PTA50_RS24920 (130915) | 130915..132657 | + | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| PTA50_RS24925 (132654) | 132654..133987 | + | 1334 | Protein_162 | L-lysine N6-monooxygenase | VF |
| PTA50_RS24930 (134013) | 134013..136214 | + | 2202 | WP_000973520.1 | Ferric aerobactin receptor | VF |
| PTA50_RS24935 (136699) | 136699..137396 | + | 698 | WP_094096600.1 | IS1 family transposase IS1S | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|