Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 35157..35782 Replicon plasmid pPBS4
Accession NZ_CP117716
Organism Escherichia coli strain PBS4

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag PTA50_RS24370 Protein ID WP_000911313.1
Coordinates 35157..35555 (-) Length 133 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID V0VCB2
Locus tag PTA50_RS24375 Protein ID WP_000450520.1
Coordinates 35555..35782 (-) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PTA50_RS24355 (31518) 31518..32015 + 498 WP_000605857.1 entry exclusion protein -
PTA50_RS24360 (32047) 32047..32778 + 732 WP_023565183.1 conjugal transfer complement resistance protein TraT -
PTA50_RS24365 (32995) 32995..35148 + 2154 WP_000009324.1 type IV conjugative transfer system coupling protein TraD -
PTA50_RS24370 (35157) 35157..35555 - 399 WP_000911313.1 type II toxin-antitoxin system VapC family toxin Toxin
PTA50_RS24375 (35555) 35555..35782 - 228 WP_000450520.1 toxin-antitoxin system antitoxin VapB Antitoxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Conjugative plasmid blaTEM-1B / tet(A) / aph(6)-Id / aph(3'')-Ib / sul2 / floR / aph(3')-Ia / dfrA14 / blaCTX-M-55 / sitABCD iucA / iucB / iucC / iucD / iutA 1..137545 137545


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-125)

Antitoxin

SpoVT-AbrB domain

(8-50)


Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 14901.15 Da        Isoelectric Point: 7.8605

>T272101 WP_000911313.1 NZ_CP117716:c35555-35157 [Escherichia coli]
MLKFMLDTNICIFTIKNKPASVRERFNLNQGRMCISSVTLMELIYGAEKSQMPERNLAVIEGFVSRIDVLDYDAAAATHS
GQIRAELARQGRPVGPFDQMIAGHARSRGLIIVTNNTREFERVDGLRIEDWS

Download         Length: 399 bp

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8596.63 Da        Isoelectric Point: 4.7513

>AT272101 WP_000450520.1 NZ_CP117716:c35782-35555 [Escherichia coli]
METTVFFSNRSQAVRLPKAVALPENVKRVEVIAVGRTRIITPAGETWDEWFDGHNVSADFMDNREQPGMQERESF

Download         Length: 228 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB V0VCB2

References