MGE detailed information
MGE type: Prophage MGE length: 8652 bp
Accession: NZ_CP117404 Location: 314269..322920 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM085 Replicon: chromosome
Accession: NZ_CP117404 Location: 314269..322920 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM085 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ07_RS01410 (310074) | 310074..311177 | + | 1104 | WP_274896206.1 | branched-chain amino acid ABC transporter substrate-binding protein | - |
| PQQ07_RS01415 (311260) | 311260..311394 | - | 135 | WP_001517957.1 | hypothetical protein | - |
| PQQ07_RS01420 (311372) | 311372..311755 | - | 384 | WP_000778874.1 | aspartate 1-decarboxylase autocleavage activator PanM | - |
| PQQ07_RS01425 (312177) | 312177..313286 | + | 1110 | WP_000822976.1 | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | - |
| PQQ07_RS01430 (313346) | 313346..314272 | + | 927 | WP_000003007.1 | high-affinity branched-chain amino acid ABC transporter permease LivH | - |
| PQQ07_RS01435 (314269) | 314269..315546 | + | 1278 | WP_000803766.1 | branched chain amino acid ABC transporter permease LivM | - |
| PQQ07_RS01440 (315543) | 315543..316310 | + | 768 | WP_274896207.1 | Lipopolysaccharide export system ATP-binding protein LptB | VF |
| PQQ07_RS01445 (316312) | 316312..317025 | + | 714 | WP_000416114.1 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | - |
| PQQ07_RS01450 (317157) | 317157..317378 | + | 222 | WP_001520924.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| PQQ07_RS01455 (317375) | 317375..317743 | + | 369 | WP_001521773.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| PQQ07_RS01460 (318002) | 318002..319318 | + | 1317 | WP_000624747.1 | sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB | - |
| PQQ07_RS01465 (319382) | 319382..320269 | + | 888 | WP_000099303.1 | sn-glycerol-3-phosphate ABC transporter permease UgpA | - |
| PQQ07_RS01470 (320266) | 320266..321111 | + | 846 | WP_128297892.1 | sn-glycerol-3-phosphate ABC transporter permease UgpE | - |
| PQQ07_RS01475 (321113) | 321113..322183 | + | 1071 | WP_000907838.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| PQQ07_RS01480 (322180) | 322180..322920 | + | 741 | WP_000073548.1 | glycerophosphodiester phosphodiesterase | - |
| PQQ07_RS01485 (322933) | 322933..323349 | - | 417 | WP_000826041.1 | DUF2756 family protein | - |
| PQQ07_RS01490 (323475) | 323475..325217 | + | 1743 | WP_000805096.1 | gamma-glutamyltransferase | - |
| PQQ07_RS01495 (325262) | 325262..326296 | - | 1035 | WP_000675710.1 | phosphotriesterase | - |
| PQQ07_RS01500 (326293) | 326293..327264 | - | 972 | WP_274896208.1 | DMT family transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Prophage | TA25959 | NC_016810 | 3744081..3752732 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26059 | NC_016856 | 3736457..3745108 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297241 | UFRD01000002 | 3923220..3931871 | 0 |