MGE detailed information
MGE type: Prophage MGE length: 8694 bp
Accession: NZ_CP117376 Location: 309639..318332 Organism: Salmonella enterica subsp. enterica serovar Newport strain RM041 Replicon: chromosome
Accession: NZ_CP117376 Location: 309639..318332 Organism: Salmonella enterica subsp. enterica serovar Newport strain RM041 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ16_RS01380 (305443) | 305443..306546 | + | 1104 | WP_001528146.1 | branched chain amino acid ABC transporter substrate-binding protein LivJ | - |
| PQQ16_RS01385 (306630) | 306630..306764 | - | 135 | WP_012219321.1 | hypothetical protein | - |
| PQQ16_RS01390 (306742) | 306742..307125 | - | 384 | WP_000778873.1 | aspartate 1-decarboxylase autocleavage activator PanM | - |
| PQQ16_RS01395 (307547) | 307547..308656 | + | 1110 | WP_000822976.1 | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | - |
| PQQ16_RS01400 (308716) | 308716..309642 | + | 927 | WP_000003007.1 | high-affinity branched-chain amino acid ABC transporter permease LivH | - |
| PQQ16_RS01405 (309639) | 309639..310916 | + | 1278 | WP_000803766.1 | branched chain amino acid ABC transporter permease LivM | - |
| PQQ16_RS01410 (310913) | 310913..311680 | + | 768 | WP_000082083.1 | Lipopolysaccharide export system ATP-binding protein LptB | VF |
| PQQ16_RS01415 (311682) | 311682..312395 | + | 714 | WP_000416114.1 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | - |
| PQQ16_RS01420 (312527) | 312527..312748 | + | 222 | WP_001535398.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| PQQ16_RS01425 (312745) | 312745..313113 | + | 369 | WP_000174966.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| PQQ16_RS01430 (313372) | 313372..314688 | + | 1317 | WP_000624747.1 | sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB | - |
| PQQ16_RS01435 (314793) | 314793..315680 | + | 888 | WP_000099303.1 | sn-glycerol-3-phosphate ABC transporter permease UgpA | - |
| PQQ16_RS01440 (315677) | 315677..316522 | + | 846 | WP_000572196.1 | sn-glycerol-3-phosphate ABC transporter permease UgpE | - |
| PQQ16_RS01445 (316525) | 316525..317595 | + | 1071 | WP_000907845.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| PQQ16_RS01450 (317592) | 317592..318332 | + | 741 | WP_000073547.1 | glycerophosphodiester phosphodiesterase | - |
| PQQ16_RS01455 (318345) | 318345..318761 | - | 417 | WP_000826046.1 | DUF2756 family protein | - |
| PQQ16_RS01460 (318887) | 318887..320629 | + | 1743 | WP_000805094.1 | gamma-glutamyltransferase | - |
| PQQ16_RS01465 (320674) | 320674..321708 | - | 1035 | WP_000675710.1 | phosphotriesterase | - |
| PQQ16_RS01470 (321705) | 321705..322676 | - | 972 | WP_001038949.1 | DMT family transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Prophage | TA25959 | NC_016810 | 3744081..3752732 | 0.008 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26059 | NC_016856 | 3736457..3745108 | 0.008 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297241 | UFRD01000002 | 3923220..3931871 | 0.008 |