MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP117357 Location: 877581..888906 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM096 Replicon: chromosome
Accession: NZ_CP117357 Location: 877581..888906 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM096 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ15_RS04290 (873027) | 873027..874125 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| PQQ15_RS04295 (874135) | 874135..875652 | + | 1518 | WP_023171334.1 | lysine--tRNA ligase | - |
| PQQ15_RS04300 (875728) | 875728..876273 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| PQQ15_RS04305 (876538) | 876538..877296 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| PQQ15_RS04315 (877581) | 877581..878387 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| PQQ15_RS04320 (878662) | 878662..878913 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| PQQ15_RS04325 (879090) | 879090..879317 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PQQ15_RS04330 (879317) | 879317..879715 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| PQQ15_RS04335 (880521) | 880521..881057 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| PQQ15_RS04340 (881104) | 881104..881736 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| PQQ15_RS04345 (882455) | 882455..883039 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| PQQ15_RS04350 (883159) | 883159..885648 | + | 2490 | WP_274882612.1 | Outer membrane usher protein PapC | VF |
| PQQ15_RS04355 (885689) | 885689..886432 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| PQQ15_RS04360 (886429) | 886429..887505 | + | 1077 | WP_023171329.1 | outer membrane protein | - |
| PQQ15_RS04365 (887649) | 887649..888161 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| PQQ15_RS04370 (888148) | 888148..888906 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| PQQ15_RS04375 (889116) | 889116..889976 | - | 861 | WP_000503684.1 | nickel/cobalt efflux protein RcnA | - |
| PQQ15_RS04380 (890098) | 890098..890370 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| PQQ15_RS04385 (890401) | 890401..891630 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| PQQ15_RS04390 (891772) | 891772..892227 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| PQQ15_RS04395 (892331) | 892331..893194 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |