MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP117338 Location: 847688..859013 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM095 Replicon: chromosome
Accession: NZ_CP117338 Location: 847688..859013 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM095 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP94_RS04070 (843134) | 843134..844232 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| PQP94_RS04075 (844242) | 844242..845759 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| PQP94_RS04080 (845835) | 845835..846380 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| PQP94_RS04085 (846645) | 846645..847403 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| PQP94_RS04095 (847688) | 847688..848494 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| PQP94_RS04100 (848769) | 848769..849020 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| PQP94_RS04105 (849197) | 849197..849424 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PQP94_RS04110 (849424) | 849424..849822 | + | 399 | WP_274895861.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| PQP94_RS04115 (850628) | 850628..851164 | + | 537 | WP_001038506.1 | hypothetical protein | VF |
| PQP94_RS04120 (851211) | 851211..851843 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| PQP94_RS04125 (852562) | 852562..853146 | + | 585 | WP_001244638.1 | GMP reductase | VF |
| PQP94_RS04130 (853266) | 853266..855755 | + | 2490 | WP_274895862.1 | Cobalt/magnesium transport protein CorA | VF |
| PQP94_RS04135 (855796) | 855796..856539 | + | 744 | WP_000798504.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | VF |
| PQP94_RS04140 (856536) | 856536..857612 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| PQP94_RS04145 (857756) | 857756..858268 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| PQP94_RS04150 (858255) | 858255..859013 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| PQP94_RS04155 (859223) | 859223..860131 | - | 909 | WP_000503671.1 | nickel/cobalt efflux protein RcnA | - |
| PQP94_RS04160 (860253) | 860253..860525 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| PQP94_RS04165 (860556) | 860556..861785 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| PQP94_RS04170 (861927) | 861927..862382 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| PQP94_RS04175 (862486) | 862486..863349 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.003 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.001 |