MGE detailed information
MGE type: Prophage MGE length: 8694 bp
Accession: NZ_CP117326 Location: 320557..329250 Organism: Salmonella enterica subsp. enterica serovar Newport strain RM108 Replicon: chromosome
Accession: NZ_CP117326 Location: 320557..329250 Organism: Salmonella enterica subsp. enterica serovar Newport strain RM108 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ05_RS01450 (316361) | 316361..317464 | + | 1104 | WP_001528146.1 | branched chain amino acid ABC transporter substrate-binding protein LivJ | - |
| PQQ05_RS01455 (317548) | 317548..317682 | - | 135 | WP_012219321.1 | hypothetical protein | - |
| PQQ05_RS01460 (317660) | 317660..318043 | - | 384 | WP_000778873.1 | aspartate 1-decarboxylase autocleavage activator PanM | - |
| PQQ05_RS01465 (318465) | 318465..319574 | + | 1110 | WP_000822976.1 | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | - |
| PQQ05_RS01470 (319634) | 319634..320560 | + | 927 | WP_000003007.1 | high-affinity branched-chain amino acid ABC transporter permease LivH | - |
| PQQ05_RS01475 (320557) | 320557..321834 | + | 1278 | WP_000803766.1 | branched chain amino acid ABC transporter permease LivM | - |
| PQQ05_RS01480 (321831) | 321831..322598 | + | 768 | WP_274895452.1 | hypothetical protein | VF |
| PQQ05_RS01485 (322600) | 322600..323313 | + | 714 | WP_000416114.1 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | - |
| PQQ05_RS01490 (323445) | 323445..323666 | + | 222 | WP_001535398.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| PQQ05_RS01495 (323663) | 323663..324031 | + | 369 | WP_000174966.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| PQQ05_RS01500 (324290) | 324290..325606 | + | 1317 | Protein_295 | sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB | - |
| PQQ05_RS01505 (325711) | 325711..326598 | + | 888 | WP_000099303.1 | sn-glycerol-3-phosphate ABC transporter permease UgpA | - |
| PQQ05_RS01510 (326595) | 326595..327440 | + | 846 | WP_000572196.1 | sn-glycerol-3-phosphate ABC transporter permease UgpE | - |
| PQQ05_RS01515 (327443) | 327443..328513 | + | 1071 | WP_000907845.1 | hypothetical protein | VF |
| PQQ05_RS01520 (328510) | 328510..329250 | + | 741 | WP_000073547.1 | glycerophosphodiester phosphodiesterase | - |
| PQQ05_RS01525 (329263) | 329263..329679 | - | 417 | WP_000826046.1 | DUF2756 family protein | - |
| PQQ05_RS01530 (329805) | 329805..331547 | + | 1743 | WP_000805094.1 | gamma-glutamyltransferase | - |
| PQQ05_RS01535 (331592) | 331592..332626 | - | 1035 | WP_000675710.1 | phosphotriesterase | - |
| PQQ05_RS01540 (332623) | 332623..333594 | - | 972 | WP_001038949.1 | DMT family transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Prophage | TA25959 | NC_016810 | 3744081..3752732 | 0.008 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26059 | NC_016856 | 3736457..3745108 | 0.008 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297241 | UFRD01000002 | 3923220..3931871 | 0.008 |