MGE detailed information
MGE type: Genomic_island MGE length: 10581 bp
Accession: NZ_CP117184 Location: 3853418..3863998 Organism: Salmonella enterica subsp. enterica strain 123 Replicon: chromosome
Accession: NZ_CP117184 Location: 3853418..3863998 Organism: Salmonella enterica subsp. enterica strain 123 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQ453_RS19050 (3849346) | 3849346..3849801 | + | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| PQ453_RS19055 (3849943) | 3849943..3851172 | + | 1230 | WP_000036825.1 | amino acid permease | - |
| PQ453_RS19060 (3851203) | 3851203..3851475 | - | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| PQ453_RS19065 (3851597) | 3851597..3852463 | + | 867 | WP_000503682.1 | nickel/cobalt efflux protein RcnA | - |
| PQ453_RS19070 (3852673) | 3852673..3853431 | - | 759 | WP_000134791.1 | transcriptional regulator | - |
| PQ453_RS19075 (3853418) | 3853418..3853930 | - | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| PQ453_RS19080 (3854074) | 3854074..3855150 | - | 1077 | WP_000141329.1 | outer membrane protein | - |
| PQ453_RS19085 (3855147) | 3855147..3855890 | - | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| PQ453_RS19090 (3855931) | 3855931..3858420 | - | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| PQ453_RS19095 (3858540) | 3858540..3859124 | - | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| PQ453_RS19100 (3859843) | 3859843..3860475 | - | 633 | WP_000835265.1 | YfdX family protein | - |
| PQ453_RS19105 (3860522) | 3860522..3861058 | - | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| PQ453_RS19110 (3861864) | 3861864..3862262 | - | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| PQ453_RS19115 (3862262) | 3862262..3862489 | - | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PQ453_RS19120 (3862666) | 3862666..3862917 | + | 252 | WP_001540858.1 | hypothetical protein | - |
| PQ453_RS19125 (3863192) | 3863192..3863998 | + | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| PQ453_RS19135 (3864283) | 3864283..3865041 | - | 759 | WP_000244329.1 | amidase activator ActS | - |
| PQ453_RS19140 (3865306) | 3865306..3865851 | + | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| PQ453_RS19145 (3865927) | 3865927..3867444 | - | 1518 | WP_273692499.1 | lysine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.002 |