MGE detailed information
MGE type: Genomic_island MGE length: 35532 bp
Accession: NZ_CP117010 Location: 1095150..1130681 Organism: Escherichia coli strain MLI110 Replicon: chromosome
Accession: NZ_CP117010 Location: 1095150..1130681 Organism: Escherichia coli strain MLI110 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL413_RS05975 (1091334) | 1091334..1092602 | - | 1269 | WP_000271951.1 | L-2-hydroxyglutarate oxidase | - |
| NL413_RS05980 (1092622) | 1092622..1093599 | - | 978 | WP_000993126.1 | glutarate dioxygenase GlaH | - |
| NL413_RS05985 (1093935) | 1093935..1096187 | - | 2253 | Protein_1039 | alpha-amylase family glycosyl hydrolase | - |
| NL413_RS05995 (1097573) | 1097573..1098946 | + | 1374 | Protein_1040 | DUF5507 domain-containing protein | - |
| NL413_RS06000 (1099340) | 1099340..1099519 | + | 180 | WP_087676347.1 | DNA invertase | - |
| NL413_RS06005 (1099674) | 1099674..1099793 | + | 120 | WP_001120794.1 | hypothetical protein | - |
| NL413_RS06010 (1099858) | 1099858..1100727 | + | 870 | Protein_1043 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| NL413_RS06015 (1100798) | 1100798..1101778 | + | 981 | WP_000019402.1 | IS5 family transposase IS5D | Transposase |
| NL413_RS06020 (1101909) | 1101909..1105631 | + | 3723 | Protein_1045 | hypothetical protein | VF |
| NL413_RS06025 (1105991) | 1105991..1106320 | - | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| NL413_RS06030 (1106341) | 1106341..1106658 | - | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| NL413_RS06035 (1106696) | 1106696..1106896 | - | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| NL413_RS06040 (1106905) | 1106905..1107387 | - | 483 | WP_001407480.1 | RadC family protein | - |
| NL413_RS06045 (1107396) | 1107396..1107854 | - | 459 | WP_000211841.1 | antirestriction protein | - |
| NL413_RS06050 (1107957) | 1107957..1108141 | - | 185 | Protein_1051 | DUF905 family protein | - |
| NL413_RS06055 (1108752) | 1108752..1110455 | - | 1704 | WP_000896263.1 | protein YfjW | - |
| NL413_RS06060 (1110597) | 1110597..1111606 | + | 1010 | Protein_1053 | arsenic transporter | - |
| NL413_RS06065 (1111619) | 1111619..1111771 | + | 153 | Protein_1054 | arsenate reductase | - |
| NL413_RS06070 (1112158) | 1112158..1112625 | - | 468 | WP_000702495.1 | protein YfjT | - |
| NL413_RS06075 (1112713) | 1112713..1113117 | + | 405 | WP_161222429.1 | IS66 family transposase ISKpn24 | Transposase |
| NL413_RS06080 (1113114) | 1113114..1113461 | + | 348 | WP_021563201.1 | IS66 family transposase ISKpn24 | Transposase |
| NL413_RS06085 (1113510) | 1113510..1115048 | + | 1539 | WP_004201219.1 | IS66 family transposase ISKpn24 | Transposase |
| NL413_RS06090 (1115111) | 1115111..1115554 | - | 444 | WP_000824222.1 | lipoprotein YfjS | - |
| NL413_RS06095 (1115554) | 1115554..1115790 | - | 237 | WP_001144029.1 | protein YpjK | - |
| NL413_RS06100 (1115831) | 1115831..1116532 | - | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| NL413_RS06105 (1116749) | 1116749..1117570 | - | 822 | WP_000197391.1 | DUF932 domain-containing protein | - |
| NL413_RS06110 (1117662) | 1117662..1118525 | - | 864 | WP_000787597.1 | GTPase family protein | - |
| NL413_RS06115 (1118880) | 1118880..1119251 | - | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| NL413_RS06120 (1119244) | 1119244..1120317 | - | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| NL413_RS06125 (1120459) | 1120459..1120722 | + | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| NL413_RS06130 (1121082) | 1121082..1122698 | + | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| NL413_RS06135 (1122695) | 1122695..1124884 | + | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| NL413_RS06140 (1125062) | 1125062..1125688 | - | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| NL413_RS06145 (1125841) | 1125841..1127250 | - | 1410 | WP_000481742.1 | YfjI family protein | - |
| NL413_RS06150 (1127379) | 1127379..1127591 | - | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| NL413_RS06155 (1127635) | 1127635..1128591 | + | 957 | WP_000510827.1 | protein YfjH | - |
| NL413_RS06160 (1128835) | 1128835..1130076 | - | 1242 | WP_257812146.1 | hypothetical protein ; Integrase | Integrase |
| NL413_RS06170 (1130857) | 1130857..1131339 | - | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| NL413_RS06175 (1131510) | 1131510..1131947 | + | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| NL413_RS06180 (1131937) | 1131937..1132227 | + | 291 | WP_001117838.1 | RnfH family protein | - |
| NL413_RS06185 (1132289) | 1132289..1132630 | - | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| NL413_RS06190 (1132779) | 1132779..1134440 | - | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| NL413_RS06195 (1134526) | 1134526..1135404 | - | 879 | WP_001059169.1 | NAD(+) kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0.004 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0.004 |