NZ_CP1161011..178682

MGE detailed information

MGE type: Conjugative plasmid        MGE length: 178682 bp
Accession: NZ_CP116101        Location: 1..178682         Organism: Escherichia coli strain DETEC-P881       Replicon: plasmid pDETEC23


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PIC52_RS22705 (283) 283..477 + 195 Protein_0 IS200/IS605-like element IS200C family transposase -
PIC52_RS22710 (606) 606..1547 - 942 WP_000974762.1 hypothetical protein -
PIC52_RS22715 (1782) 1782..3171 - 1390 Protein_2 ISNCY family transposase ISKpn21 Transposase
PIC52_RS22720 (3481) 3481..3630 - 150 Protein_3 IS3 family transposase IS2 Transposase
PIC52_RS22725 (3808) 3808..5001 - 1194 WP_000450494.1 GTP-binding protein -
PIC52_RS22730 (6243) 6243..6980 - 738 Protein_5 IS3 family transposase IS2 Transposase
PIC52_RS22735 (7033) 7033..8195 + 1163 WP_088846059.1 IS3 family transposase ISEc17 Transposase
PIC52_RS22740 (8212) 8212..8732 - 521 Protein_7 IS3 family transposase IS2 Transposase
PIC52_RS22745 (9357) 9357..9650 + 294 WP_000738422.1 increased serum survival lipoprotein Iss -
PIC52_RS22750 (9708) 9708..9907 - 200 Protein_9 lysis protein -
PIC52_RS22755 (10461) 10461..11485 + 1025 Protein_10 integrase core domain-containing protein -
PIC52_RS22760 (12796) 12796..13911 + 1116 WP_001318220.1 Elloramycin glycosyltransferase ElmGT VF
PIC52_RS22765 (14051) 14051..17710 + 3660 WP_001389363.1 Multidrug efflux ATP-binding/permease protein VF
PIC52_RS22770 (17814) 17814..19043 + 1230 WP_000933678.1 Enterochelin esterase VF
PIC52_RS22775 (19128) 19128..20084 + 957 WP_000271274.1 hypothetical protein VF
PIC52_RS22780 (20129) 20129..22306 - 2178 WP_001222185.1 Ferric enterobactin receptor VF
PIC52_RS22785 (23172) 23172..24206 - 1035 WP_001190234.1 3-deoxy-7-phosphoheptulonate synthase -
PIC52_RS22790 (24387) 24387..24688 + 302 Protein_17 hypothetical protein -
PIC52_RS22795 (24766) 24766..25059 - 294 WP_000269327.1 DUF6404 family protein -
PIC52_RS22800 (25227) 25227..25352 - 126 Protein_19 type II toxin-antitoxin system toxin YacB -
PIC52_RS22805 (25352) 25352..25620 - 269 Protein_20 type II toxin-antitoxin system antitoxin YacA -
PIC52_RS22810 (26231) 26231..27505 + 1275 WP_000489609.1 HlyD family secretion protein -
PIC52_RS22815 (27498) 27498..29594 + 2097 WP_000184924.1 microcin H47 export transporter peptidase/ATP-binding subunit MchF -
PIC52_RS22820 (29764) 29764..30075 - 312 WP_001259758.1 colicin V -
PIC52_RS22825 (30053) 30053..30289 - 237 WP_001323890.1 colicin V immunity protein -
PIC52_RS22830 (30408) 30408..30851 + 444 WP_001323891.1 dehydrogenase -
PIC52_RS22835 (30823) 30823..31227 + 405 WP_001389361.1 hypothetical protein -
PIC52_RS22840 (31229) 31229..31498 + 270 WP_000379710.1 SemiSWEET transporter -
PIC52_RS22845 (31495) 31495..32475 + 981 WP_001017346.1 NAD(P)-binding domain-containing protein -
PIC52_RS22850 (32551) 32551..32931 + 381 WP_001171523.1 IS66 family transposase ISEc8 Transposase
PIC52_RS22855 (32928) 32928..33275 + 348 WP_000612591.1 IS66 family transposase ISEc8 Transposase
PIC52_RS22860 (33325) 33325..34862 + 1538 Protein_31 IS66 family transposase ISEc8 Transposase
PIC52_RS22865 (34902) 34902..35168 + 267 Protein_32 Tn3 family transposase TnpR_TnEc1 Transposase
PIC52_RS22870 (35215) 35215..35607 - 393 Protein_33 peptide deformylase -
PIC52_RS22875 (35716) 35716..39849 - 4134 WP_001080137.1 Temperature-sensitive hemagglutinin tsh autotransporter VF
PIC52_RS22880 (40020) 40020..40211 + 192 Protein_35 IS91 family transposase -
PIC52_RS22885 (40490) 40490..40747 + 258 Protein_36 IS3 family transposase IS911 Transposase
PIC52_RS22890 (40815) 40815..41966 + 1152 WP_001442799.1 IS30 family transposase IS30D Transposase
PIC52_RS22895 (42088) 42088..42453 + 366 WP_000124098.1 hypothetical protein -
PIC52_RS22900 (42453) 42453..43568 + 1116 Protein_39 IS91 family transposase IS91 Transposase
PIC52_RS22905 (43749) 43749..44093 - 345 WP_001553768.1 hypothetical protein -
PIC52_RS22910 (44951) 44951..46702 - 1752 Protein_41 Tn3 family transposase TnpA_TnAs1 Transposase
PIC52_RS22915 (46706) 46706..47098 + 393 WP_001351729.1 isochorismatase family cysteine hydrolase -
PIC52_RS22920 (47236) 47236..48120 + 885 WP_000058717.1 EamA family transporter -
PIC52_RS22925 (48152) 48152..49351 - 1200 WP_001493765.1 Tetracycline resistance protein, class C ARG
PIC52_RS22930 (49457) 49457..50107 + 651 WP_001493764.1 tetracycline resistance transcriptional repressor TetR(A) -
PIC52_RS22935 (50139) 50139..50381 - 243 WP_000844627.1 transposase -
PIC52_RS22940 (50544) 50544..51089 + 546 WP_001493763.1 plasmid pRiA4b ORF-3 family protein -
PIC52_RS22945 (51226) 51226..51798 + 573 WP_001493762.1 Tn3 family transposase TnpR_ISPa40 Transposase
PIC52_RS22950 (51835) 51835..53226 + 1392 WP_001493761.1 ISKra4 family transposase ISKpn19 Transposase
PIC52_RS22955 (53259) 53259..53687 + 429 Protein_50 Tn3 family transposase TnpR_ISMex22 Transposase
PIC52_RS22960 (54006) 54006..54662 - 657 WP_001516695.1 Pentapeptide repeat protein ARG
PIC52_RS22965 (55057) 55057..55673 + 617 Protein_52 transposase -
PIC52_RS22970 (55740) 55740..56444 + 705 WP_086525284.1 IS6 family transposase IS26 Transposase
PIC52_RS22975 (56390) 56390..57502 - 1113 WP_024166810.1 IS91 family transposase ISAzo26 Transposase
PIC52_RS22980 (57658) 57658..58131 + 474 WP_004201280.1 Dihydrofolate reductase type 1 ARG
PIC52_RS22985 (58201) 58201..58905 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
PIC52_RS22990 (58959) 58959..59273 + 315 Protein_57 Tn3 family transposase TnpR_TnAs3 Transposase
PIC52_RS22995 (59276) 59276..62242 + 2967 WP_001138070.1 Tn3 family transposase TnpA_ISPa38 Transposase
PIC52_RS23000 (62321) 62321..63325 + 1005 WP_000427619.1 IS110 family transposase IS5075 Transposase
PIC52_RS23005 (63597) 63597..63683 - 87 Protein_60 Arm DNA-binding domain-containing protein -
PIC52_RS23010 (64013) 64013..64828 + 816 WP_001043260.1 Dihydropteroate synthase ARG
PIC52_RS23015 (64889) 64889..65692 + 804 WP_001082319.1 Aminoglycoside 3'-phosphotransferase ARG
PIC52_RS23020 (65692) 65692..66528 + 837 WP_000480968.1 hypothetical protein ARG
PIC52_RS23025 (66759) 66759..67619 - 861 WP_000027057.1 Beta-lactamase TEM ARG
PIC52_RS23030 (67802) 67802..68359 - 558 WP_001235713.1 Tn3 family transposase TnpR_Tn3 Transposase
PIC52_RS23035 (68523) 68523..71528 + 3006 WP_001143760.1 Tn3 family transposase TnpA_Tn3 Transposase
PIC52_RS23040 (71461) 71461..71926 - 466 Protein_67 plasmid replication initiator RepA -
PIC52_RS23045 (71919) 71919..72401 - 483 WP_001273588.1 hypothetical protein -
PIC52_RS23050 (72394) 72394..72441 - 48 WP_229471593.1 hypothetical protein -
PIC52_RS23055 (72432) 72432..72683 + 252 WP_223195197.1 replication protein RepA -
PIC52_RS23060 (72700) 72700..72957 - 258 WP_000083845.1 replication regulatory protein RepA -
PIC52_RS23065 (73241) 73241..73390 - 150 WP_001312851.1 Hok/Gef family protein -
PIC52_RS23070 (73602) 73602..75143 + 1542 WP_001298859.1 IS21 family transposase ISEc12 Transposase
PIC52_RS23075 (75158) 75158..75904 + 747 WP_001016257.1 IS21 family transposase ISEc12 Transposase
- (76023) 76023..76084 + 62 NuclAT_1 - -
- (76023) 76023..76084 + 62 NuclAT_1 - -
- (76023) 76023..76084 + 62 NuclAT_1 - -
- (76023) 76023..76084 + 62 NuclAT_1 - -
PIC52_RS23080 (76340) 76340..76414 - 75 Protein_75 endonuclease -
PIC52_RS23085 (76660) 76660..76872 - 213 WP_001299730.1 ANR family transcriptional regulator -
PIC52_RS23090 (77008) 77008..77568 - 561 WP_000139315.1 fertility inhibition protein FinO -
PIC52_RS23095 (77671) 77671..78531 - 861 WP_000704513.1 Quorum-quenching protein AidA VF
PIC52_RS23100 (78590) 78590..79336 - 747 WP_000205749.1 conjugal transfer pilus acetylase TraX -
PIC52_RS23105 (79356) 79356..84626 - 5271 WP_000986963.1 Multifunctional conjugation protein TraI Relaxase
PIC52_RS23110 (84708) 84708..84935 + 228 WP_000450520.1 toxin-antitoxin system antitoxin VapB Antitoxin Detail
PIC52_RS23115 (84935) 84935..85333 + 399 WP_000911313.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
PIC52_RS23120 (85342) 85342..87495 - 2154 WP_000009324.1 type IV conjugative transfer system coupling protein TraD -
PIC52_RS23125 (87748) 87748..88479 - 732 WP_023565183.1 conjugal transfer complement resistance protein TraT -
PIC52_RS23130 (88511) 88511..89008 - 498 WP_000605857.1 entry exclusion protein -
PIC52_RS23135 (89024) 89024..91846 - 2823 WP_001007018.1 conjugal transfer mating-pair stabilization protein TraG -
PIC52_RS23140 (91843) 91843..93216 - 1374 WP_001517790.1 conjugal transfer pilus assembly protein TraH -
PIC52_RS23145 (93216) 93216..93596 - 381 WP_001389370.1 F-type conjugal transfer protein TrbF -
PIC52_RS23150 (93583) 93583..93924 - 342 WP_001443031.1 P-type conjugative transfer protein TrbJ -
PIC52_RS23155 (93854) 93854..94399 - 546 WP_000059851.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
PIC52_RS23160 (94386) 94386..94670 - 285 WP_000624109.1 type-F conjugative transfer system pilin chaperone TraQ -
PIC52_RS23165 (94751) 94751..95065 + 315 WP_001324103.1 hypothetical protein -
PIC52_RS23170 (95067) 95067..95414 - 348 WP_001287910.1 conjugal transfer protein TrbA -
PIC52_RS23175 (95430) 95430..96173 - 744 WP_001030377.1 type-F conjugative transfer system pilin assembly protein TraF -
PIC52_RS23180 (96166) 96166..96423 - 258 WP_000864318.1 conjugal transfer protein TrbE -
PIC52_RS23185 (96450) 96450..98258 - 1809 WP_000821838.1 type-F conjugative transfer system mating-pair stabilization protein TraN -
PIC52_RS23190 (98255) 98255..98893 - 639 WP_000777695.1 type-F conjugative transfer system pilin assembly protein TrbC -
PIC52_RS23195 (98902) 98902..99894 - 993 WP_000830183.1 conjugal transfer pilus assembly protein TraU -
PIC52_RS23200 (99891) 99891..100523 - 633 WP_001203717.1 type-F conjugative transfer system protein TraW -
PIC52_RS23205 (100520) 100520..100906 - 387 WP_000099691.1 type-F conjugative transfer system protein TrbI -
PIC52_RS23210 (100903) 100903..103530 - 2628 WP_001064245.1 type IV secretion system protein TraC -
PIC52_RS23215 (103690) 103690..103911 - 222 WP_001278689.1 conjugal transfer protein TraR -
PIC52_RS23220 (104046) 104046..104561 - 516 WP_000809838.1 type IV conjugative transfer system lipoprotein TraV -
PIC52_RS23225 (104558) 104558..104809 - 252 WP_001038342.1 conjugal transfer protein TrbG -
PIC52_RS23230 (104821) 104821..105018 - 198 WP_024179215.1 conjugal transfer protein TrbD -
PIC52_RS23235 (105005) 105005..105595 - 591 WP_000002787.1 conjugal transfer pilus-stabilizing protein TraP -
PIC52_RS23240 (105585) 105585..107012 - 1428 WP_000146684.1 F-type conjugal transfer pilus assembly protein TraB -
PIC52_RS23245 (107012) 107012..107740 - 729 WP_001230813.1 type-F conjugative transfer system secretin TraK -
PIC52_RS23250 (107727) 107727..108293 - 567 WP_000399790.1 type IV conjugative transfer system protein TraE -
PIC52_RS23255 (108315) 108315..108626 - 312 WP_000012106.1 type IV conjugative transfer system protein TraL -
PIC52_RS23260 (108641) 108641..109006 - 366 WP_000340282.1 type IV conjugative transfer system pilin TraA -
PIC52_RS23265 (109049) 109049..109264 - 216 WP_001352842.1 conjugal transfer relaxosome protein TraY -
PIC52_RS23270 (109400) 109400..110047 - 648 WP_000332520.1 conjugal transfer transcriptional regulator TraJ -
PIC52_RS23275 (110239) 110239..110622 - 384 WP_001063020.1 conjugal transfer relaxosome DNA-binding protein TraM -
PIC52_RS23280 (110962) 110962..111564 + 603 WP_077248356.1 hypothetical protein VF
PIC52_RS23285 (111859) 111859..112680 - 822 WP_001234475.1 DUF932 domain-containing protein -
PIC52_RS23290 (112799) 112799..113086 - 288 WP_000107546.1 hypothetical protein -
PIC52_RS23295 (113111) 113111..113317 - 207 WP_000547965.1 hypothetical protein -
PIC52_RS23300 (113387) 113387..113683 + 297 Protein_119 hypothetical protein -
PIC52_RS23305 (113984) 113984..114109 - 126 WP_096937776.1 type I toxin-antitoxin system Hok family toxin Toxin Detail
PIC52_RS23310 (114051) 114051..114200 - 150 Protein_121 DUF5431 family protein -
- (114207) 114207..114405 - 199 NuclAT_0 - Antitoxin Detail
- (114207) 114207..114405 - 199 NuclAT_0 - Antitoxin Detail
- (114207) 114207..114405 - 199 NuclAT_0 - Antitoxin Detail
- (114207) 114207..114405 - 199 NuclAT_0 - Antitoxin Detail
PIC52_RS23315 (114374) 114374..115136 - 763 Protein_122 plasmid SOS inhibition protein A -
PIC52_RS23320 (115133) 115133..115567 - 435 WP_000845928.1 conjugation system SOS inhibitor PsiB -
PIC52_RS23325 (115622) 115622..117580 - 1959 WP_029487628.1 ParB/RepB/Spo0J family partition protein -
PIC52_RS23330 (117646) 117646..117879 - 234 WP_000005990.1 DUF905 family protein -
PIC52_RS23335 (117936) 117936..118475 - 540 WP_000290801.1 single-stranded DNA-binding protein -
PIC52_RS23340 (118793) 118793..119302 + 510 WP_071600123.1 hypothetical protein -
PIC52_RS23345 (119272) 119272..119463 - 192 WP_001027495.1 hypothetical protein -
PIC52_RS23350 (119460) 119460..119882 - 423 WP_000271685.1 DUF1380 family protein -
PIC52_RS23355 (119929) 119929..120354 - 426 WP_001198918.1 antirestriction protein -
PIC52_RS23360 (120767) 120767..121543 - 777 WP_001005035.1 hypothetical protein -
PIC52_RS23365 (121589) 121589..122143 - 555 WP_077248347.1 DUF1380 family protein -
PIC52_RS23370 (122037) 122037..122258 - 222 WP_001104870.1 hypothetical protein -
PIC52_RS23375 (122259) 122259..122942 - 684 WP_000085939.1 DNA methylase -
PIC52_RS23380 (123019) 123019..123324 - 306 WP_010891292.1 hypothetical protein -
PIC52_RS23385 (123328) 123328..124229 - 902 Protein_136 DUF1281 domain-containing protein -
PIC52_RS23390 (125139) 125139..126110 - 972 WP_000817035.1 ParB/RepB/Spo0J family plasmid partition protein -
PIC52_RS23395 (126110) 126110..127276 - 1167 WP_000772446.1 hypothetical protein VF
PIC52_RS23400 (127864) 127864..128619 - 756 WP_000852146.1 replication initiation protein RepE -
PIC52_RS23405 (129371) 129371..130177 - 807 WP_000016982.1 site-specific integrase -
PIC52_RS23410 (130178) 130178..130483 - 306 WP_001159868.1 type II toxin-antitoxin system toxin CcdB Toxin Detail
PIC52_RS23415 (130485) 130485..130703 - 219 WP_000813634.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin Detail
PIC52_RS23420 (131295) 131295..131783 + 489 WP_011254646.1 hypothetical protein -
PIC52_RS23425 (131817) 131817..132950 - 1134 WP_000545984.1 DUF3800 domain-containing protein -
PIC52_RS23430 (133117) 133117..133890 - 774 WP_000905949.1 hypothetical protein -
PIC52_RS23435 (133903) 133903..134403 - 501 WP_000528932.1 HEPN family nuclease -
PIC52_RS23440 (134668) 134668..134898 + 231 WP_001261278.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin Detail
PIC52_RS23445 (134895) 134895..135311 + 417 WP_001034046.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
PIC52_RS23450 (135356) 135356..139150 - 3795 WP_001144731.1 hypothetical protein -
PIC52_RS23455 (139531) 139531..139761 + 231 WP_001261286.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin Detail
PIC52_RS23460 (139758) 139758..140174 + 417 WP_001034044.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
PIC52_RS23465 (140249) 140249..141814 + 1566 WP_001128474.1 AAA family ATPase -
PIC52_RS23470 (141799) 141799..142821 + 1023 WP_000361402.1 helicase UvrD -
PIC52_RS23480 (144152) 144152..146353 - 2202 WP_000973519.1 Ferric aerobactin receptor VF
PIC52_RS23485 (146379) 146379..147712 - 1334 Protein_156 L-lysine N6-monooxygenase VF
PIC52_RS23490 (147709) 147709..149451 - 1743 WP_001015721.1 Aerobactin synthase VF
PIC52_RS23495 (149451) 149451..150398 - 948 WP_000011908.1 N(6)-hydroxylysine O-acetyltransferase VF
PIC52_RS23500 (150399) 150399..152123 - 1725 WP_000602863.1 N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase VF
PIC52_RS23505 (152259) 152259..153452 + 1194 WP_000095526.1 MFS transporter -
PIC52_RS23510 (153832) 153832..154212 - 381 WP_001318207.1 fluoride efflux transporter CrcB -
PIC52_RS23515 (154696) 154696..154884 + 189 WP_000957857.1 hypothetical protein -
PIC52_RS23520 (154894) 154894..156093 + 1200 WP_000948429.1 IS91 family transposase ISSbo1 Transposase
PIC52_RS23525 (156208) 156208..156654 - 447 Protein_164 phosphopyruvate hydratase -
PIC52_RS23530 (157143) 157143..158000 - 858 WP_000968139.1 Manganese transport system membrane protein MntB ARG
PIC52_RS23535 (157997) 157997..158854 - 858 WP_001101723.1 Manganese transport system membrane protein MntB ARG
PIC52_RS23540 (158851) 158851..159678 - 828 WP_000983710.1 Manganese transport system ATP-binding protein MntB VF
PIC52_RS23545 (159678) 159678..160592 - 915 WP_000949004.1 putative periplasmic iron-binding protein VF
PIC52_RS23550 (160948) 160948..161645 + 698 WP_223155668.1 IS1 family transposase IS1S Transposase
PIC52_RS23555 (161825) 161825..162338 - 514 Protein_170 DUF4113 domain-containing protein -
PIC52_RS23560 (162399) 162399..162503 - 105 Protein_171 AAA family ATPase -
PIC52_RS23565 (162505) 162505..162828 - 324 Protein_172 IS21 family transposase IS21 Transposase
PIC52_RS23570 (163574) 163574..164551 + 978 WP_000361611.1 RepB family plasmid replication initiator protein -
PIC52_RS23575 (164836) 164836..165576 - 741 WP_001066954.1 tyrosine-type recombinase/integrase -
PIC52_RS23580 (165697) 165697..165885 - 189 WP_001324033.1 hypothetical protein -
PIC52_RS23585 (166259) 166259..167161 - 903 WP_001312822.1 hypothetical protein VF
PIC52_RS23590 (167230) 167230..168339 - 1110 WP_000771475.1 SDR family oxidoreductase -
PIC52_RS23595 (168772) 168772..169725 - 954 WP_000280980.1 Protease 7 VF
PIC52_RS23600 (171022) 171022..171201 - 180 Protein_179 integrase core domain-containing protein -
PIC52_RS23605 (171340) 171340..172539 + 1200 Protein_180 IS3 family transposase IS629 Transposase
PIC52_RS23610 (172687) 172687..173012 - 326 Protein_181 IS3 family transposase ISLad1 Transposase
PIC52_RS23615 (173058) 173058..173398 + 341 Protein_182 IS3 family transposase -
PIC52_RS23620 (173993) 173993..175180 + 1188 WP_000928804.1 efflux RND transporter periplasmic adaptor subunit -
PIC52_RS23625 (175177) 175177..177117 + 1941 WP_000733250.1 Macrolide export ATP-binding/permease protein MacB VF
PIC52_RS23630 (177121) 177121..178491 + 1371 WP_001312828.1 efflux transporter outer membrane subunit -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance