MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP116042 Location: 879453..890778 Organism: Salmonella enterica subsp. enterica serovar 14[5]12:i:- strain BL708 Replicon: chromosome
Accession: NZ_CP116042 Location: 879453..890778 Organism: Salmonella enterica subsp. enterica serovar 14[5]12:i:- strain BL708 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PGC28_RS04265 (874899) | 874899..875997 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| PGC28_RS04270 (876007) | 876007..877524 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| PGC28_RS04275 (877600) | 877600..878145 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| PGC28_RS04280 (878410) | 878410..879168 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| PGC28_RS04290 (879453) | 879453..880259 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| PGC28_RS04295 (880534) | 880534..880785 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| PGC28_RS04300 (880962) | 880962..881189 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PGC28_RS04305 (881189) | 881189..881587 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| PGC28_RS04310 (882393) | 882393..882929 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| PGC28_RS04315 (882976) | 882976..883608 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| PGC28_RS04320 (884327) | 884327..884911 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| PGC28_RS04325 (885031) | 885031..887520 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| PGC28_RS04330 (887561) | 887561..888304 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| PGC28_RS04335 (888301) | 888301..889377 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| PGC28_RS04340 (889521) | 889521..890033 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| PGC28_RS04345 (890020) | 890020..890778 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| PGC28_RS04350 (890988) | 890988..891842 | - | 855 | WP_000503685.1 | nickel/cobalt efflux protein RcnA | - |
| PGC28_RS04355 (891964) | 891964..892236 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| PGC28_RS04360 (892267) | 892267..893496 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| PGC28_RS04365 (893638) | 893638..894093 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| PGC28_RS04370 (894197) | 894197..895060 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |