MGE detailed information
MGE type: Genomic_island MGE length: 41886 bp
Accession: NZ_CP114896 Location: 2212574..2254459 Organism: Escherichia coli strain CM93 Replicon: chromosome
Accession: NZ_CP114896 Location: 2212574..2254459 Organism: Escherichia coli strain CM93 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6117_RS10850 (2208210) | 2208210..2209871 | + | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| O6117_RS10855 (2210020) | 2210020..2210361 | + | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| O6117_RS10860 (2210423) | 2210423..2210713 | - | 291 | WP_001117838.1 | RnfH family protein | - |
| O6117_RS10865 (2210703) | 2210703..2211140 | - | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| O6117_RS10870 (2211311) | 2211311..2211793 | + | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| O6117_RS10880 (2212574) | 2212574..2213815 | + | 1242 | WP_000101722.1 | Prophage integrase IntA ; Integrase | Integrase |
| O6117_RS10885 (2214059) | 2214059..2215015 | - | 957 | WP_000510827.1 | protein YfjH | - |
| O6117_RS10890 (2215059) | 2215059..2215271 | + | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| O6117_RS10895 (2215400) | 2215400..2216809 | + | 1410 | WP_000481742.1 | YfjI family protein | - |
| O6117_RS10900 (2216962) | 2216962..2217588 | + | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| O6117_RS10905 (2217766) | 2217766..2219955 | - | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| O6117_RS10910 (2219952) | 2219952..2221568 | - | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| O6117_RS10915 (2221928) | 2221928..2222191 | - | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| O6117_RS10920 (2222333) | 2222333..2223406 | + | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| O6117_RS10925 (2223399) | 2223399..2223770 | + | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| O6117_RS10930 (2224125) | 2224125..2224988 | + | 864 | WP_000787597.1 | GTPase family protein | - |
| O6117_RS10935 (2225080) | 2225080..2225901 | + | 822 | WP_000197391.1 | DUF932 domain-containing protein | - |
| O6117_RS10940 (2226118) | 2226118..2226819 | + | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| O6117_RS10945 (2226860) | 2226860..2227096 | + | 237 | WP_001144029.1 | protein YpjK | - |
| O6117_RS10950 (2227096) | 2227096..2227539 | + | 444 | WP_000824222.1 | lipoprotein YfjS | - |
| O6117_RS10955 (2227563) | 2227563..2228030 | + | 468 | WP_000702495.1 | protein YfjT | - |
| O6117_RS10960 (2228417) | 2228417..2228569 | - | 153 | Protein_2139 | arsenate reductase | - |
| O6117_RS10965 (2228582) | 2228582..2229591 | - | 1010 | Protein_2140 | arsenic transporter | - |
| O6117_RS10970 (2229733) | 2229733..2231436 | + | 1704 | WP_000896263.1 | protein YfjW | - |
| O6117_RS10975 (2232047) | 2232047..2232231 | + | 185 | Protein_2142 | DUF905 family protein | - |
| O6117_RS10980 (2232334) | 2232334..2232792 | + | 459 | WP_000211841.1 | antirestriction protein | - |
| O6117_RS10985 (2232801) | 2232801..2233283 | + | 483 | WP_001407480.1 | RadC family protein | - |
| O6117_RS10990 (2233292) | 2233292..2233492 | + | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| O6117_RS10995 (2233530) | 2233530..2233847 | + | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| O6117_RS11000 (2233868) | 2233868..2234197 | + | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| O6117_RS11005 (2234561) | 2234561..2239141 | - | 4581 | WP_010723187.1 | putative autotransporter | VF |
| O6117_RS11010 (2239206) | 2239206..2239325 | - | 120 | WP_001120794.1 | hypothetical protein | - |
| O6117_RS11015 (2239480) | 2239480..2239659 | - | 180 | WP_087676347.1 | DNA invertase | - |
| O6117_RS11020 (2240053) | 2240053..2241426 | - | 1374 | Protein_2151 | DUF5507 domain-containing protein | - |
| O6117_RS11030 (2242812) | 2242812..2245064 | + | 2253 | Protein_2152 | alpha-amylase family glycosyl hydrolase | - |
| O6117_RS11035 (2245400) | 2245400..2246377 | + | 978 | WP_000993126.1 | glutarate dioxygenase GlaH | - |
| O6117_RS11040 (2246397) | 2246397..2247665 | + | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| O6117_RS11045 (2247688) | 2247688..2249136 | + | 1449 | WP_000772830.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| O6117_RS11050 (2249150) | 2249150..2250430 | + | 1281 | WP_001087611.1 | 4-aminobutyrate aminotransferase GabT | VF |
| O6117_RS11055 (2250668) | 2250668..2252068 | + | 1401 | WP_001295173.1 | GABA permease | - |
| O6117_RS11060 (2252089) | 2252089..2252751 | + | 663 | WP_000156811.1 | DNA-binding transcriptional regulator CsiR | - |
| O6117_RS11065 (2252752) | 2252752..2253201 | - | 450 | WP_000522415.1 | potassium binding protein Kbp | - |
| O6117_RS11070 (2253285) | 2253285..2253443 | - | 159 | WP_000508177.1 | YqaE/Pmp3 family membrane protein | - |
| O6117_RS11075 (2253626) | 2253626..2253925 | + | 300 | WP_000137280.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| O6117_RS11080 (2253935) | 2253935..2254459 | + | 525 | WP_001229442.1 | thiosulfate sulfurtransferase YgaP | - |
| O6117_RS11085 (2254506) | 2254506..2254910 | - | 405 | WP_000115383.1 | DNA-binding protein StpA | - |
| O6117_RS11090 (2255579) | 2255579..2256028 | + | 450 | WP_000492656.1 | L-alanine exporter AlaE | - |
| O6117_RS11095 (2256065) | 2256065..2256409 | - | 345 | WP_000281320.1 | DUF2002 family protein | - |
| O6117_RS11100 (2256561) | 2256561..2256890 | + | 330 | WP_024255351.1 | DUF883 domain-containing protein | - |
| O6117_RS11105 (2257138) | 2257138..2257383 | + | 246 | WP_001223227.1 | glutaredoxin-like protein NrdH | - |
| O6117_RS11110 (2257380) | 2257380..2257790 | + | 411 | WP_000080947.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0.007 |