MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP113538 Location: 877461..888786 Organism: Salmonella enterica strain XSK Replicon: chromosome
Accession: NZ_CP113538 Location: 877461..888786 Organism: Salmonella enterica strain XSK Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OXV06_RS04180 (872907) | 872907..874005 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| OXV06_RS04185 (874015) | 874015..875532 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| OXV06_RS04190 (875608) | 875608..876153 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| OXV06_RS04195 (876418) | 876418..877176 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| OXV06_RS04205 (877461) | 877461..878267 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| OXV06_RS04210 (878542) | 878542..878793 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| OXV06_RS04215 (878970) | 878970..879197 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| OXV06_RS04220 (879197) | 879197..879595 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| OXV06_RS04225 (880401) | 880401..880937 | + | 537 | WP_001038506.1 | Carbon storage regulator | VF |
| OXV06_RS04230 (880984) | 880984..881616 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| OXV06_RS04235 (882335) | 882335..882919 | + | 585 | WP_001244638.1 | hypothetical protein | VF |
| OXV06_RS04240 (883039) | 883039..885528 | + | 2490 | WP_000705483.1 | hypothetical protein | VF |
| OXV06_RS04245 (885569) | 885569..886312 | + | 744 | WP_000798504.1 | hypothetical protein | VF |
| OXV06_RS04250 (886309) | 886309..887385 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| OXV06_RS04255 (887529) | 887529..888041 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| OXV06_RS04260 (888028) | 888028..888786 | + | 759 | WP_024159577.1 | transcriptional regulator | - |
| OXV06_RS04265 (888996) | 888996..889832 | - | 837 | WP_000503692.1 | nickel/cobalt efflux protein RcnA | - |
| OXV06_RS04270 (889954) | 889954..890226 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| OXV06_RS04275 (890257) | 890257..891486 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| OXV06_RS04280 (891628) | 891628..892083 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| OXV06_RS04285 (892187) | 892187..893050 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.001 |