MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 74611 bp
Accession: NZ_CP110362 Location: 427843..502453 Organism: Dickeya dadantii strain XJ12 Replicon: chromosome
Accession: NZ_CP110362 Location: 427843..502453 Organism: Dickeya dadantii strain XJ12 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OL445_RS01995 | 423387..424043 | - | 657 | WP_013318560.1 | UvrY/SirA/GacA family response regulator transcription factor | - |
| OL445_RS02000 | 424694..424918 | + | 225 | WP_013318562.1 | DUF2594 family protein | - |
| OL445_RS02010 | 425653..427056 | + | 1404 | WP_013318563.1 | D-serine/D-alanine/glycine transporter | - |
| OL445_RS02015 | 427132..427398 | - | 267 | Protein_394 | LysR family transcriptional regulator | - |
| OL445_RS02025 | 428020..429303 | + | 1284 | WP_013318565.1 | hypothetical protein ; Integrase | Integrase |
| OL445_RS02030 | 429458..429769 | - | 312 | WP_013318566.1 | DUF736 domain-containing protein | - |
| OL445_RS02035 | 430784..431710 | + | 927 | WP_013318567.1 | hypothetical protein | - |
| OL445_RS02040 | 432256..432756 | - | 501 | WP_013318568.1 | SMI1/KNR4 family protein | - |
| OL445_RS02045 | 432767..433159 | - | 393 | WP_284603835.1 | HNH endonuclease signature motif containing protein | - |
| OL445_RS02050 | 433163..437076 | - | 3914 | Protein_400 | RHS repeat-associated core domain-containing protein | - |
| OL445_RS02055 | 437088..437495 | - | 408 | WP_013318570.1 | DUF1795 domain-containing protein | - |
| OL445_RS02060 | 437509..439362 | - | 1854 | WP_013318571.1 | hypothetical protein | VF |
| OL445_RS02065 | 439475..439993 | - | 519 | WP_013318572.1 | hypothetical protein | VF |
| OL445_RS02070 | 440430..440576 | + | 147 | WP_158305123.1 | hypothetical protein | - |
| OL445_RS02075 | 440677..440922 | + | 246 | WP_013318575.1 | helix-turn-helix transcriptional regulator | - |
| OL445_RS02080 | 441252..441539 | - | 288 | WP_033111943.1 | helix-turn-helix transcriptional regulator | - |
| OL445_RS02085 | 441644..441898 | + | 255 | WP_013318577.1 | helix-turn-helix transcriptional regulator | - |
| OL445_RS02090 | 441986..442234 | + | 249 | WP_013318578.1 | helix-turn-helix transcriptional regulator | - |
| OL445_RS02095 | 442533..442820 | - | 288 | WP_033111944.1 | helix-turn-helix transcriptional regulator | - |
| OL445_RS02100 | 442954..443232 | + | 279 | WP_013318581.1 | hypothetical protein | VF |
| OL445_RS02105 | 443346..443603 | + | 258 | WP_013318582.1 | helix-turn-helix transcriptional regulator | - |
| OL445_RS02110 | 444280..444474 | + | 195 | WP_013318585.1 | AlpA family transcriptional regulator | - |
| OL445_RS02115 | 444491..445075 | + | 585 | WP_013318586.1 | DUF2857 domain-containing protein | - |
| OL445_RS02120 | 445065..445274 | + | 210 | WP_033111945.1 | TraR/DksA family transcriptional regulator | - |
| OL445_RS02125 | 445493..447373 | + | 1881 | WP_013318588.1 | DUF4209 domain-containing protein | - |
| OL445_RS02130 | 448066..448299 | + | 234 | WP_033111946.1 | hypothetical protein | - |
| OL445_RS02135 | 448369..449016 | + | 648 | WP_033111947.1 | hypothetical protein | VF |
| OL445_RS02140 | 449030..449311 | + | 282 | WP_013318592.1 | hypothetical protein | VF |
| OL445_RS02145 | 449322..452069 | + | 2748 | WP_033111948.1 | hypothetical protein | VF |
| OL445_RS02150 | 452095..452811 | + | 717 | WP_013318594.1 | type IV secretion system protein | - |
| OL445_RS02155 | 452822..453046 | + | 225 | WP_071819883.1 | EexN family lipoprotein | - |
| OL445_RS02160 | 453058..454086 | + | 1029 | WP_013318596.1 | type IV secretion system protein | - |
| OL445_RS02165 | 454307..454990 | + | 684 | WP_013318597.1 | hypothetical protein | VF |
| OL445_RS02170 | 454987..455880 | + | 894 | WP_013318598.1 | P-type conjugative transfer protein VirB9 | - |
| OL445_RS02175 | 455877..457085 | + | 1209 | WP_013318599.1 | hypothetical protein | VF |
| OL445_RS02180 | 457075..458091 | + | 1017 | WP_013318600.1 | hypothetical protein | VF |
| OL445_RS02185 | 458132..458434 | + | 303 | WP_013318601.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| OL445_RS02190 | 459131..460894 | + | 1764 | WP_081441344.1 | type IV secretion system DNA-binding domain-containing protein | - |
| OL445_RS02195 | 460903..461649 | + | 747 | WP_013318604.1 | MobC family replication-relaxation protein | - |
| OL445_RS02200 | 461921..463159 | + | 1239 | WP_033111949.1 | IS110 family transposase ISCps4 | Transposase |
| OL445_RS02205 | 463280..464146 | - | 867 | WP_202796554.1 | hypothetical protein | - |
| OL445_RS02210 | 464372..465028 | - | 657 | WP_013318607.1 | hypothetical protein | - |
| OL445_RS02215 | 465332..465775 | - | 444 | WP_013318608.1 | hypothetical protein | - |
| OL445_RS02220 | 465984..466277 | - | 294 | WP_013318609.1 | hypothetical protein | - |
| OL445_RS02225 | 466244..466531 | - | 288 | WP_013318610.1 | hypothetical protein | - |
| OL445_RS02230 | 466767..466901 | + | 135 | Protein_436 | mobilization protein mobC | - |
| OL445_RS02235 | 466898..467212 | - | 315 | WP_013318612.1 | CcdB family protein | Toxin Detail |
| OL445_RS02240 | 467215..467451 | - | 237 | WP_013318613.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| OL445_RS02245 | 467722..468007 | + | 286 | Protein_439 | integrase core domain-containing protein | - |
| OL445_RS02250 | 468870..469280 | + | 411 | WP_148226884.1 | hypothetical protein | - |
| OL445_RS02255 | 469343..469738 | + | 396 | WP_013318616.1 | hypothetical protein | - |
| OL445_RS02260 | 469752..471068 | + | 1317 | WP_013318617.1 | hypothetical protein | - |
| OL445_RS02265 | 471081..471953 | + | 873 | WP_071819884.1 | deoxyribonuclease | - |
| OL445_RS02270 | 471950..472585 | + | 636 | WP_013318619.1 | hypothetical protein | - |
| OL445_RS02275 | 472621..476247 | + | 3627 | WP_013318620.1 | hypothetical protein | - |
| OL445_RS02280 | 476244..489278 | + | 13035 | WP_071819885.1 | LysM peptidoglycan-binding domain-containing protein | - |
| OL445_RS02285 | 489539..489832 | + | 294 | Protein_447 | integrase | - |
| OL445_RS02290 | 489830..490102 | + | 273 | Protein_448 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| OL445_RS02295 | 490099..490413 | - | 315 | WP_013318624.1 | CcdB family protein | Toxin Detail |
| OL445_RS02300 | 490416..490652 | - | 237 | WP_013318625.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| OL445_RS02305 | 490967..491911 | - | 945 | WP_033111950.1 | zincin-like metallopeptidase domain-containing protein | - |
| OL445_RS02310 | 492626..493945 | + | 1320 | Protein_452 | TerB N-terminal domain-containing protein | - |
| OL445_RS02315 | 493933..494358 | + | 426 | Protein_453 | DEAD/DEAH box helicase | - |
| OL445_RS02320 | 494441..494569 | - | 129 | WP_284603348.1 | hypothetical protein | - |
| OL445_RS02325 | 495061..496680 | - | 1620 | WP_284603349.1 | TIGR04141 family sporadically distributed protein | - |
| OL445_RS02330 | 496702..497349 | - | 648 | WP_013318631.1 | His-Xaa-Ser repeat protein HxsA | - |
| OL445_RS02335 | 497346..498458 | - | 1113 | WP_013318632.1 | His-Xaa-Ser system radical SAM maturase HxsC | - |
| OL445_RS02340 | 498451..499845 | - | 1395 | WP_013318633.1 | His-Xaa-Ser system radical SAM maturase HxsB | - |
| OL445_RS02345 | 499842..500117 | - | 276 | WP_033111952.1 | His-Xaa-Ser system protein HxsD | - |
| OL445_RS02350 | 500607..501113 | - | 507 | WP_033111953.1 | hypothetical protein | - |
| OL445_RS02355 | 501844..502328 | + | 485 | Protein_461 | IS3 family transposase IS1400 | Transposase |
| OL445_RS02360 | 503071..504318 | + | 1248 | WP_077246669.1 | glycosyltransferase | - |
| OL445_RS02365 | 504624..506387 | + | 1764 | WP_077246670.1 | gamma-glutamyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Dickeya dadantii 3937 | Integrative and Conjugative Element | TA24906, TA24907 | NC_014500 | 3126494..3201103 | 0 |