MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP104366 Location: 847361..858686 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain PNUSAS028809 Replicon: chromosome
Accession: NZ_CP104366 Location: 847361..858686 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain PNUSAS028809 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4533_RS04060 (842807) | 842807..843905 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| N4533_RS04065 (843915) | 843915..845432 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| N4533_RS04070 (845508) | 845508..846053 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| N4533_RS04075 (846318) | 846318..847076 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| N4533_RS04085 (847361) | 847361..848167 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| N4533_RS04090 (848442) | 848442..848693 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| N4533_RS04095 (848870) | 848870..849097 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| N4533_RS04100 (849097) | 849097..849495 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| N4533_RS04105 (850301) | 850301..850837 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| N4533_RS04110 (850884) | 850884..851516 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| N4533_RS04115 (852235) | 852235..852819 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| N4533_RS04120 (852939) | 852939..855428 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| N4533_RS04125 (855469) | 855469..856212 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| N4533_RS04130 (856209) | 856209..857285 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| N4533_RS04135 (857429) | 857429..857941 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| N4533_RS04140 (857928) | 857928..858686 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| N4533_RS04145 (858896) | 858896..859780 | - | 885 | WP_000503677.1 | nickel/cobalt efflux protein RcnA | - |
| N4533_RS04150 (859902) | 859902..860174 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| N4533_RS04155 (860205) | 860205..861434 | - | 1230 | WP_140236595.1 | amino acid permease | - |
| N4533_RS04160 (861576) | 861576..862031 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| N4533_RS04165 (862135) | 862135..862998 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |