MGE detailed information
MGE type: Conjugative plasmid MGE length: 138020 bp
Accession: NZ_CP103593 Location: 1..138020 Organism: Escherichia coli O25b:H4-ST131 strain 4224 Replicon: plasmid pMB7542_1
Accession: NZ_CP103593 Location: 1..138020 Organism: Escherichia coli O25b:H4-ST131 strain 4224 Replicon: plasmid pMB7542_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S53_RS24945 (1) | 1..978 | + | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| M5S53_RS24950 (1263) | 1263..2003 | - | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| M5S53_RS24955 (2124) | 2124..2312 | - | 189 | WP_001309252.1 | hypothetical protein | - |
| M5S53_RS24960 (2679) | 2679..3848 | + | 1170 | WP_001072358.1 | hypothetical protein | - |
| M5S53_RS24965 (4074) | 4074..4249 | - | 176 | Protein_4 | IS3 family transposase | - |
| M5S53_RS24970 (4695) | 4695..4967 | - | 273 | WP_001322642.1 | Major pilu subunit operon regulatory protein PapB | VF |
| M5S53_RS24975 (5504) | 5504..5928 | - | 425 | Protein_6 | IS3 family transposase IS2 | Transposase |
| M5S53_RS24980 (6210) | 6210..8180 | + | 1971 | WP_001298664.1 | Hemin receptor | VF |
| M5S53_RS24985 (8187) | 8187..8804 | + | 618 | WP_259384718.1 | DUF4198 domain-containing protein | - |
| M5S53_RS24990 (8725) | 8725..10296 | - | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| M5S53_RS24995 (10316) | 10316..10663 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| M5S53_RS25000 (10663) | 10663..11340 | - | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| M5S53_RS25005 (11446) | 11446..11685 | + | 240 | WP_259384719.1 | hypothetical protein | - |
| M5S53_RS25010 (11748) | 11748..12356 | - | 609 | Protein_13 | IS66 family transposase ISEc22 | Transposase |
| M5S53_RS25015 (12424) | 12424..13206 | - | 783 | WP_001300609.1 | IS21 family transposase IS100kyp | Transposase |
| M5S53_RS25020 (13203) | 13203..14225 | - | 1023 | WP_001310017.1 | IS21 family transposase IS100kyp | Transposase |
| M5S53_RS25025 (14311) | 14311..15256 | - | 946 | Protein_16 | IS66 family transposase ISEc8 | Transposase |
| M5S53_RS25030 (15305) | 15305..15652 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| M5S53_RS25035 (15649) | 15649..16053 | - | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| M5S53_RS25040 (16133) | 16133..16351 | - | 219 | Protein_19 | IS3 family transposase | - |
| M5S53_RS25045 (16417) | 16417..17121 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| M5S53_RS25050 (17192) | 17192..17896 | + | 705 | WP_180327046.1 | replication initiation protein RepE | - |
| M5S53_RS25055 (18484) | 18484..19650 | + | 1167 | WP_000772446.1 | hypothetical protein | VF |
| M5S53_RS25060 (19650) | 19650..20621 | + | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| M5S53_RS25065 (21488) | 21488..22390 | + | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| M5S53_RS25070 (22387) | 22387..22698 | + | 312 | WP_032143366.1 | hypothetical protein | - |
| M5S53_RS25075 (22775) | 22775..23458 | + | 684 | WP_000086185.1 | DNA methylase | - |
| M5S53_RS25080 (23459) | 23459..23680 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| M5S53_RS25085 (23610) | 23610..24128 | + | 519 | WP_123325260.1 | DUF1380 family protein | - |
| M5S53_RS25090 (24179) | 24179..24955 | + | 777 | WP_001753849.1 | hypothetical protein | - |
| M5S53_RS25095 (25372) | 25372..25797 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| M5S53_RS25100 (25844) | 25844..26266 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| M5S53_RS25105 (26263) | 26263..26454 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| M5S53_RS25110 (27489) | 27489..27719 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| M5S53_RS25115 (27771) | 27771..29132 | + | 1362 | WP_000170714.1 | DUF3560 domain-containing protein | - |
| M5S53_RS25120 (29180) | 29180..29743 | + | 564 | WP_001348621.1 | class I SAM-dependent methyltransferase | - |
| M5S53_RS25125 (29769) | 29769..30017 | + | 249 | WP_001553845.1 | hypothetical protein | - |
| M5S53_RS25130 (30180) | 30180..30515 | + | 336 | WP_013023883.1 | hypothetical protein | - |
| M5S53_RS25135 (30428) | 30428..30634 | + | 207 | WP_000547975.1 | hypothetical protein | - |
| M5S53_RS25140 (30660) | 30660..31199 | + | 540 | WP_000290841.1 | single-stranded DNA-binding protein | - |
| M5S53_RS25145 (31262) | 31262..31495 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| M5S53_RS25150 (31561) | 31561..33519 | + | 1959 | WP_000117179.1 | ParB/RepB/Spo0J family partition protein | - |
| M5S53_RS25155 (33574) | 33574..34008 | + | 435 | WP_000845940.1 | conjugation system SOS inhibitor PsiB | - |
| M5S53_RS25160 (34005) | 34005..34767 | + | 763 | Protein_43 | plasmid SOS inhibition protein A | - |
| - (34736) | 34736..34922 | + | 187 | NuclAT_0 | - | - |
| - (34736) | 34736..34922 | + | 187 | NuclAT_0 | - | - |
| - (34736) | 34736..34922 | + | 187 | NuclAT_0 | - | - |
| - (34736) | 34736..34922 | + | 187 | NuclAT_0 | - | - |
| M5S53_RS25165 (34970) | 34970..36339 | + | 1370 | WP_085947770.1 | IS3 family transposase IS150 | Transposase |
| - (36366) | 36366..36406 | + | 41 | NuclAT_1 | - | Antitoxin Detail |
| - (36366) | 36366..36406 | + | 41 | NuclAT_1 | - | Antitoxin Detail |
| - (36366) | 36366..36406 | + | 41 | NuclAT_1 | - | Antitoxin Detail |
| - (36366) | 36366..36406 | + | 41 | NuclAT_1 | - | Antitoxin Detail |
| M5S53_RS25170 (36392) | 36392..36541 | + | 150 | Protein_45 | plasmid maintenance protein Mok | - |
| M5S53_RS25175 (36483) | 36483..36608 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| M5S53_RS25180 (36828) | 36828..37058 | + | 231 | WP_001426396.1 | hypothetical protein | - |
| M5S53_RS25185 (37056) | 37056..37229 | - | 174 | Protein_48 | hypothetical protein | - |
| M5S53_RS25190 (37299) | 37299..37505 | + | 207 | WP_000275859.1 | hypothetical protein | - |
| M5S53_RS25195 (37530) | 37530..37682 | + | 153 | WP_231527929.1 | hypothetical protein | - |
| M5S53_RS25200 (37719) | 37719..38423 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| M5S53_RS25205 (38369) | 38369..39034 | - | 666 | WP_259384720.1 | hypothetical protein | VF |
| M5S53_RS25210 (39374) | 39374..39757 | + | 384 | WP_001151566.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| M5S53_RS25215 (39891) | 39891..40568 | + | 678 | WP_001348626.1 | PAS domain-containing protein | - |
| M5S53_RS25220 (40656) | 40656..40883 | + | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| M5S53_RS25225 (40917) | 40917..41279 | + | 363 | WP_000338606.1 | type IV conjugative transfer system pilin TraA | - |
| M5S53_RS25230 (41284) | 41284..41595 | + | 312 | WP_000012107.1 | type IV conjugative transfer system protein TraL | - |
| M5S53_RS25235 (41669) | 41669..42366 | + | 698 | WP_223216367.1 | IS1 family transposase IS1G | Transposase |
| M5S53_RS25240 (42414) | 42414..42734 | + | 321 | WP_001348757.1 | conjugal transfer protein TrbA | - |
| M5S53_RS25245 (42861) | 42861..43145 | + | 285 | WP_001617873.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| M5S53_RS25250 (43132) | 43132..43677 | + | 546 | WP_000059829.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| M5S53_RS25255 (43607) | 43607..43954 | + | 348 | WP_071571857.1 | P-type conjugative transfer protein TrbJ | - |
| M5S53_RS25260 (43935) | 43935..44327 | + | 393 | WP_000659962.1 | F-type conjugal transfer protein TrbF | - |
| M5S53_RS25265 (44314) | 44314..45687 | + | 1374 | WP_000944328.1 | conjugal transfer pilus assembly protein TraH | - |
| M5S53_RS25270 (45684) | 45684..48503 | + | 2820 | WP_001007062.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| M5S53_RS25275 (48522) | 48522..49019 | + | 498 | WP_000605862.1 | entry exclusion protein | - |
| M5S53_RS25280 (49051) | 49051..49782 | + | 732 | WP_000850429.1 | conjugal transfer complement resistance protein TraT | - |
| M5S53_RS25285 (49985) | 49985..50764 | + | 780 | WP_000199914.1 | hypothetical protein | - |
| M5S53_RS25290 (50761) | 50761..53031 | + | 2271 | WP_094283620.1 | type IV conjugative transfer system coupling protein TraD | - |
| M5S53_RS25295 (53031) | 53031..58301 | + | 5271 | WP_001617867.1 | Multifunctional conjugation protein TraI | Relaxase |
| M5S53_RS25300 (58321) | 58321..59067 | + | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| M5S53_RS25305 (59122) | 59122..59682 | + | 561 | WP_000139341.1 | fertility inhibition protein FinO | - |
| M5S53_RS25310 (59813) | 59813..60025 | + | 213 | WP_013023861.1 | hypothetical protein | - |
| M5S53_RS25315 (60584) | 60584..61009 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| M5S53_RS25320 (61006) | 61006..61356 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| M5S53_RS25325 (61387) | 61387..63000 | + | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| M5S53_RS25330 (63078) | 63078..63364 | + | 287 | Protein_77 | DUF2726 domain-containing protein | - |
| - (63331) | 63331..63391 | - | 61 | NuclAT_2 | - | Antitoxin Detail |
| - (63331) | 63331..63391 | - | 61 | NuclAT_2 | - | Antitoxin Detail |
| - (63331) | 63331..63391 | - | 61 | NuclAT_2 | - | Antitoxin Detail |
| - (63331) | 63331..63391 | - | 61 | NuclAT_2 | - | Antitoxin Detail |
| M5S53_RS25335 (63436) | 63436..63570 | + | 135 | WP_023144756.1 | Hok/Gef family protein | Toxin Detail |
| M5S53_RS25340 (63888) | 63888..64121 | + | 234 | WP_214124381.1 | replication regulatory protein RepA | - |
| M5S53_RS25345 (64227) | 64227..64358 | + | 132 | Protein_80 | protein CopA/IncA | - |
| M5S53_RS25350 (64358) | 64358..64432 | + | 75 | WP_031943482.1 | RepA leader peptide Tap | - |
| M5S53_RS25355 (64425) | 64425..65282 | + | 858 | WP_001617855.1 | incFII family plasmid replication initiator RepA | - |
| M5S53_RS25360 (66222) | 66222..66875 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| M5S53_RS25365 (66968) | 66968..67225 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| M5S53_RS25370 (67158) | 67158..67559 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| M5S53_RS25375 (67808) | 67808..68223 | + | 416 | Protein_86 | IS1 family transposase | - |
| M5S53_RS25380 (68259) | 68259..68804 | - | 546 | Protein_87 | Tn3 family transposase TnpA_Tn3 | Transposase |
| M5S53_RS25385 (68870) | 68870..69574 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| M5S53_RS25390 (69888) | 69888..70763 | + | 876 | WP_032277257.1 | Beta-lactamase CTX-M-97 | ARG |
| M5S53_RS25395 (70798) | 70798..71160 | + | 363 | Protein_90 | IS5 family transposase IS903B | Transposase |
| M5S53_RS25400 (71220) | 71220..71924 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| M5S53_RS25405 (72077) | 72077..72937 | + | 861 | WP_000493383.1 | EamA family transporter | - |
| M5S53_RS25410 (72969) | 72969..74168 | - | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| M5S53_RS25415 (74274) | 74274..74900 | + | 627 | WP_031606906.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| M5S53_RS25420 (74932) | 74932..75168 | - | 237 | WP_042005022.1 | hypothetical protein | - |
| M5S53_RS25425 (75222) | 75222..76058 | - | 837 | WP_000480972.1 | hypothetical protein | ARG |
| M5S53_RS25430 (76058) | 76058..76861 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| M5S53_RS25435 (76922) | 76922..77737 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| M5S53_RS25440 (78045) | 78045..78221 | - | 177 | Protein_99 | replication protein C, IncQ-type | - |
| M5S53_RS25445 (78282) | 78282..78986 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| M5S53_RS25450 (79108) | 79108..80013 | + | 906 | WP_000219391.1 | hypothetical protein | ARG |
| M5S53_RS25455 (80010) | 80010..81248 | + | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
| M5S53_RS25460 (81248) | 81248..81832 | + | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| M5S53_RS25465 (82325) | 82325..83089 | - | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| M5S53_RS25470 (83207) | 83207..83272 | - | 66 | Protein_105 | EAL domain-containing protein | - |
| M5S53_RS25475 (83316) | 83316..83621 | - | 306 | WP_000130000.1 | Transcriptional regulator | Relaxase |
| M5S53_RS25480 (83632) | 83632..84837 | - | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| M5S53_RS25485 (84993) | 84993..85196 | - | 204 | WP_000376616.1 | hypothetical protein | - |
| M5S53_RS25490 (85324) | 85324..86163 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| M5S53_RS25495 (86157) | 86157..86504 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| M5S53_RS25500 (86710) | 86710..87498 | - | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| M5S53_RS25505 (87629) | 87629..88102 | - | 474 | WP_001389366.1 | Dihydrofolate reductase type 1 | ARG |
| M5S53_RS25510 (88260) | 88260..89009 | + | 750 | Protein_113 | IS91 family transposase ISAzo26 | Transposase |
| M5S53_RS25515 (89068) | 89068..89772 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| M5S53_RS25520 (89910) | 89910..90080 | + | 171 | Protein_115 | DsbA family protein | - |
| M5S53_RS25525 (90070) | 90070..90576 | + | 507 | WP_000949452.1 | protein disulfide oxidoreductase | - |
| M5S53_RS25530 (90813) | 90813..91574 | + | 762 | WP_001225378.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| M5S53_RS25535 (91921) | 91921..93807 | + | 1887 | WP_000118029.1 | FTR1 family protein | - |
| M5S53_RS25540 (93848) | 93848..94375 | + | 528 | WP_000178050.1 | iron transporter | - |
| M5S53_RS25545 (94479) | 94479..95858 | + | 1380 | WP_000119836.1 | Fe-S-containing protein | - |
| M5S53_RS25550 (95861) | 95861..97144 | + | 1284 | WP_000964653.1 | ABC transporter permease | - |
| M5S53_RS25555 (97134) | 97134..98264 | + | 1131 | WP_000729218.1 | ABC transporter permease | - |
| M5S53_RS25560 (98269) | 98269..98964 | + | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| M5S53_RS25565 (98951) | 98951..99436 | + | 486 | WP_001267176.1 | TlpA disulfide reductase family protein | - |
| M5S53_RS25570 (99461) | 99461..99946 | + | 486 | WP_000874189.1 | hypothetical protein | - |
| M5S53_RS25575 (100068) | 100068..100701 | + | 634 | Protein_126 | histidine-type phosphatase | - |
| M5S53_RS25580 (100851) | 100851..101024 | - | 174 | Protein_127 | IS5 family transposase ISKpn26 | Transposase |
| M5S53_RS25585 (101025) | 101025..101339 | - | 315 | Protein_128 | IS5 family transposase ISKpn26 | Transposase |
| M5S53_RS25590 (102012) | 102012..102751 | - | 740 | Protein_129 | IS3 family transposase IS629 | Transposase |
| M5S53_RS25595 (102853) | 102853..103113 | + | 261 | WP_000371882.1 | hypothetical protein | - |
| M5S53_RS25600 (103110) | 103110..103619 | + | 510 | WP_000194542.1 | hypothetical protein | - |
| M5S53_RS25605 (103639) | 103639..103986 | - | 348 | WP_000142452.1 | DUF6404 family protein | - |
| M5S53_RS25610 (104115) | 104115..104450 | + | 336 | WP_001080732.1 | colicin E1 family microcin immunity protein | - |
| M5S53_RS25615 (105902) | 105902..106527 | + | 626 | Protein_134 | replication initiation protein | - |
| M5S53_RS25620 (106901) | 106901..107776 | + | 876 | WP_001224623.1 | ChaN family lipoprotein | - |
| M5S53_RS25625 (107784) | 107784..108560 | + | 777 | WP_000981091.1 | energy transducer TonB | - |
| M5S53_RS25630 (108729) | 108729..110990 | + | 2262 | WP_001100763.1 | TonB-dependent receptor | - |
| M5S53_RS25635 (111059) | 111059..112234 | + | 1176 | WP_001020413.1 | putative protein YncE | VF |
| M5S53_RS25640 (112757) | 112757..113062 | - | 306 | Protein_139 | IS91 family transposase ISSbo1 | Transposase |
| M5S53_RS25645 (113088) | 113088..113827 | + | 740 | Protein_140 | IS3 family transposase IS629 | Transposase |
| M5S53_RS25650 (114500) | 114500..116008 | + | 1509 | WP_001189113.1 | group II intron reverse transcriptase/maturase | - |
| M5S53_RS25655 (116092) | 116092..116217 | + | 126 | Protein_142 | IS3 family transposase | - |
| M5S53_RS25660 (116270) | 116270..116974 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| M5S53_RS25665 (117852) | 117852..118658 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| M5S53_RS25670 (118659) | 118659..118964 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| M5S53_RS25675 (118966) | 118966..119184 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| M5S53_RS25680 (119892) | 119892..120887 | + | 996 | WP_000246636.1 | hypothetical protein | - |
| M5S53_RS25685 (120930) | 120930..121823 | + | 894 | WP_001553853.1 | S-4TM family putative pore-forming effector | - |
| M5S53_RS25695 (122871) | 122871..125987 | - | 3117 | WP_001553854.1 | HsdR family type I site-specific deoxyribonuclease | - |
| M5S53_RS25700 (126109) | 126109..127392 | - | 1284 | WP_001617890.1 | restriction endonuclease subunit S | - |
| M5S53_RS25705 (127389) | 127389..128945 | - | 1557 | WP_001617892.1 | type I restriction-modification system subunit M | - |
| M5S53_RS25710 (129128) | 129128..129349 | + | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| M5S53_RS25715 (129349) | 129349..129729 | + | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| M5S53_RS25720 (129734) | 129734..129913 | + | 180 | WP_001513661.1 | hypothetical protein | - |
| M5S53_RS25725 (129941) | 129941..130219 | + | 279 | Protein_156 | pdcB | - |
| M5S53_RS25730 (130224) | 130224..130637 | + | 414 | Protein_157 | IS3 family transposase ISLad1 | Transposase |
| M5S53_RS25735 (130587) | 130587..130922 | - | 336 | WP_169329198.1 | type I deoxyribonuclease HsdR | - |
| M5S53_RS25740 (131132) | 131132..132112 | - | 981 | WP_000019407.1 | IS5 family transposase IS5D | Transposase |
| M5S53_RS25745 (132356) | 132356..133759 | + | 1404 | WP_001373486.1 | S-methylmethionine permease | - |
| M5S53_RS25750 (133746) | 133746..134678 | + | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| M5S53_RS25755 (134787) | 134787..135116 | - | 330 | Protein_162 | TOBE domain-containing protein | - |
| M5S53_RS25765 (135977) | 135977..136135 | + | 159 | WP_228955855.1 | abortive infection family protein | - |
| M5S53_RS25770 (136294) | 136294..137265 | - | 972 | Protein_165 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|