MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 72929 bp
Accession: NZ_CP101618 Location: 1..72929 Organism: Escherichia coli strain DC71 Replicon: plasmid pDC71-3
Accession: NZ_CP101618 Location: 1..72929 Organism: Escherichia coli strain DC71 Replicon: plasmid pDC71-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NOF56_RS23890 (1) | 1..624 | + | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| NOF56_RS23895 (602) | 602..721 | - | 120 | Protein_1 | transcriptional regulator | - |
| NOF56_RS23905 (1482) | 1482..1670 | + | 189 | Protein_3 | hypothetical protein | - |
| NOF56_RS23910 (1705) | 1705..1833 | - | 129 | Protein_4 | IS481 family transposase | - |
| NOF56_RS23915 (1866) | 1866..3035 | - | 1170 | WP_001072355.1 | hypothetical protein | - |
| NOF56_RS23920 (3567) | 3567..3835 | + | 269 | Protein_6 | type II toxin-antitoxin system ParD family antitoxin | - |
| NOF56_RS23925 (3822) | 3822..4111 | + | 290 | Protein_7 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NOF56_RS23930 (4178) | 4178..4360 | + | 183 | WP_042065278.1 | hypothetical protein | - |
| NOF56_RS23935 (4481) | 4481..5221 | + | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| NOF56_RS23940 (5506) | 5506..6483 | - | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| NOF56_RS23945 (7279) | 7279..7692 | - | 414 | Protein_11 | IS3 family transposase ISLad1 | Transposase |
| NOF56_RS23950 (7697) | 7697..7975 | - | 279 | Protein_12 | pdcB | - |
| NOF56_RS23955 (8003) | 8003..8182 | - | 180 | WP_001513661.1 | hypothetical protein | - |
| NOF56_RS23960 (8187) | 8187..8567 | - | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| NOF56_RS23965 (8567) | 8567..8788 | - | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| NOF56_RS23970 (8971) | 8971..10527 | + | 1557 | WP_001553856.1 | type I restriction-modification system subunit M | - |
| NOF56_RS23975 (10524) | 10524..11807 | + | 1284 | WP_001617890.1 | restriction endonuclease subunit S | - |
| NOF56_RS23980 (11929) | 11929..15045 | + | 3117 | WP_031311986.1 | HsdR family type I site-specific deoxyribonuclease | - |
| NOF56_RS23985 (15259) | 15259..15956 | + | 698 | WP_223364856.1 | IS1 family transposase IS1G | Transposase |
| NOF56_RS23990 (16093) | 16093..16986 | - | 894 | WP_001553853.1 | S-4TM family putative pore-forming effector | - |
| NOF56_RS23995 (17029) | 17029..18024 | - | 996 | WP_000246636.1 | hypothetical protein | - |
| NOF56_RS24000 (18489) | 18489..20627 | + | 2139 | WP_000350635.1 | AAA family ATPase | - |
| NOF56_RS24005 (20789) | 20789..21205 | - | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| NOF56_RS24010 (21202) | 21202..21432 | - | 231 | WP_001261287.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| NOF56_RS24015 (21739) | 21739..24858 | + | 3120 | WP_023909028.1 | hypothetical protein | - |
| NOF56_RS24020 (25121) | 25121..26254 | + | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| NOF56_RS24025 (26274) | 26274..26558 | + | 285 | WP_000642771.1 | hypothetical protein | - |
| NOF56_RS24030 (26555) | 26555..26752 | - | 198 | WP_000215657.1 | hypothetical protein | - |
| NOF56_RS24035 (27386) | 27386..27604 | + | 219 | WP_023909027.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| NOF56_RS24040 (27606) | 27606..27911 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| NOF56_RS24045 (27912) | 27912..28718 | + | 807 | WP_000016982.1 | site-specific integrase | - |
| NOF56_RS24050 (29492) | 29492..30247 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| NOF56_RS24055 (30835) | 30835..32001 | + | 1167 | WP_000772446.1 | hypothetical protein | VF |
| NOF56_RS24060 (32001) | 32001..32972 | + | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| NOF56_RS24065 (33839) | 33839..34741 | + | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| NOF56_RS24070 (34738) | 34738..35049 | + | 312 | WP_011254640.1 | hypothetical protein | - |
| NOF56_RS24075 (35126) | 35126..35809 | + | 684 | WP_000086185.1 | DNA methylase | - |
| NOF56_RS24080 (35810) | 35810..36031 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| NOF56_RS24085 (35961) | 35961..36479 | + | 519 | WP_123325260.1 | DUF1380 family protein | - |
| NOF56_RS24090 (36530) | 36530..37304 | + | 775 | Protein_40 | hypothetical protein | - |
| NOF56_RS24095 (37721) | 37721..38146 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| NOF56_RS24100 (38193) | 38193..38615 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| NOF56_RS24105 (38612) | 38612..38803 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| NOF56_RS24110 (39117) | 39117..40728 | - | 1612 | Protein_44 | group II intron reverse transcriptase/maturase | - |
| NOF56_RS24115 (41508) | 41508..41662 | - | 155 | Protein_45 | hypothetical protein | - |
| NOF56_RS24120 (42176) | 42176..42406 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| NOF56_RS24125 (42458) | 42458..43516 | + | 1059 | Protein_47 | DUF3560 domain-containing protein | - |
| NOF56_RS24130 (43510) | 43510..45903 | + | 2394 | Protein_48 | Multifunctional conjugation protein TraI | Relaxase |
| NOF56_RS24135 (45923) | 45923..46669 | + | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| NOF56_RS24140 (46724) | 46724..47284 | + | 561 | WP_000139341.1 | fertility inhibition protein FinO | - |
| NOF56_RS24145 (47318) | 47318..48664 | - | 1347 | WP_000483766.1 | IS4 family transposase IS4 | Transposase |
| NOF56_RS24150 (48854) | 48854..49066 | + | 213 | WP_013023861.1 | hypothetical protein | - |
| NOF56_RS24155 (49579) | 49579..49865 | + | 287 | Protein_53 | DUF2726 domain-containing protein | - |
| - (49832) | 49832..49892 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (49832) | 49832..49892 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (49832) | 49832..49892 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (49832) | 49832..49892 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| NOF56_RS24160 (49937) | 49937..50071 | + | 135 | WP_023144756.1 | Hok/Gef family protein | Toxin Detail |
| NOF56_RS24165 (50368) | 50368..50622 | + | 255 | WP_000083850.1 | replication regulatory protein RepA | - |
| NOF56_RS24170 (50782) | 50782..51528 | - | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| NOF56_RS24175 (51543) | 51543..53081 | - | 1539 | WP_255862077.1 | IS21 family transposase ISEc12 | Transposase |
| NOF56_RS24180 (53312) | 53312..53443 | + | 132 | Protein_58 | protein CopA/IncA | - |
| NOF56_RS24185 (53443) | 53443..53517 | + | 75 | WP_031943482.1 | RepA leader peptide Tap | - |
| NOF56_RS24190 (53510) | 53510..54367 | + | 858 | WP_000130640.1 | incFII family plasmid replication initiator RepA | - |
| NOF56_RS24195 (55307) | 55307..55960 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| NOF56_RS24200 (56053) | 56053..56310 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| NOF56_RS24205 (56243) | 56243..56644 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| NOF56_RS24210 (56781) | 56781..59117 | - | 2337 | Protein_64 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| NOF56_RS24215 (59189) | 59189..59893 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| NOF56_RS24220 (60015) | 60015..60920 | + | 906 | WP_000219391.1 | hypothetical protein | ARG |
| NOF56_RS24225 (60917) | 60917..62155 | + | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
| NOF56_RS24230 (62155) | 62155..62739 | + | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| NOF56_RS24235 (63232) | 63232..63996 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| NOF56_RS24240 (64136) | 64136..64840 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| NOF56_RS24245 (64731) | 64731..65039 | - | 309 | Protein_71 | EAL domain-containing protein | - |
| NOF56_RS24250 (65242) | 65242..66255 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| NOF56_RS24255 (66413) | 66413..66886 | + | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| NOF56_RS24260 (67017) | 67017..67805 | + | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| NOF56_RS24265 (68011) | 68011..68359 | + | 349 | Protein_75 | quaternary ammonium compound efflux SMR transporter QacE delta 1 | - |
| NOF56_RS24270 (68353) | 68353..69193 | + | 841 | Protein_76 | Dihydropteroate synthase | ARG |
| NOF56_RS24275 (69321) | 69321..69524 | + | 204 | WP_000376616.1 | hypothetical protein | - |
| NOF56_RS24280 (69680) | 69680..70045 | + | 366 | Protein_78 | chromate transporter | - |
| NOF56_RS24285 (70099) | 70099..70803 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| NOF56_RS24290 (70937) | 70937..71530 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| NOF56_RS24295 (71643) | 71643..72848 | - | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|