MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP101388 Location: 880392..891717 Organism: Salmonella enterica strain SC2017167 Replicon: chromosome
Accession: NZ_CP101388 Location: 880392..891717 Organism: Salmonella enterica strain SC2017167 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMU38_RS04260 (875838) | 875838..876936 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| NMU38_RS04265 (876946) | 876946..878463 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| NMU38_RS04270 (878539) | 878539..879084 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| NMU38_RS04275 (879349) | 879349..880107 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| NMU38_RS04285 (880392) | 880392..881198 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| NMU38_RS04290 (881473) | 881473..881724 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| NMU38_RS04295 (881901) | 881901..882128 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| NMU38_RS04300 (882128) | 882128..882526 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| NMU38_RS04305 (883332) | 883332..883868 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| NMU38_RS04310 (883915) | 883915..884547 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| NMU38_RS04315 (885266) | 885266..885850 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| NMU38_RS04320 (885970) | 885970..888459 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| NMU38_RS04325 (888500) | 888500..889243 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| NMU38_RS04330 (889240) | 889240..890316 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| NMU38_RS04335 (890460) | 890460..890972 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| NMU38_RS04340 (890959) | 890959..891717 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| NMU38_RS04345 (891927) | 891927..892769 | - | 843 | WP_000503690.1 | nickel/cobalt efflux protein RcnA | - |
| NMU38_RS04350 (892891) | 892891..893163 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| NMU38_RS04355 (893194) | 893194..894423 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| NMU38_RS04360 (894565) | 894565..895020 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| NMU38_RS04365 (895124) | 895124..895987 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |