MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP101375 Location: 1532769..1544094 Organism: Salmonella enterica strain SC2016090 Replicon: chromosome
Accession: NZ_CP101375 Location: 1532769..1544094 Organism: Salmonella enterica strain SC2016090 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMU33_RS07540 (1528215) | 1528215..1529313 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| NMU33_RS07545 (1529323) | 1529323..1530840 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| NMU33_RS07550 (1530916) | 1530916..1531461 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| NMU33_RS07555 (1531726) | 1531726..1532484 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| NMU33_RS07565 (1532769) | 1532769..1533575 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| NMU33_RS07570 (1533850) | 1533850..1534101 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| NMU33_RS07575 (1534278) | 1534278..1534505 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| NMU33_RS07580 (1534505) | 1534505..1534903 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| NMU33_RS07585 (1535709) | 1535709..1536245 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| NMU33_RS07590 (1536292) | 1536292..1536924 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| NMU33_RS07595 (1537643) | 1537643..1538227 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| NMU33_RS07600 (1538347) | 1538347..1540836 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| NMU33_RS07605 (1540877) | 1540877..1541620 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| NMU33_RS07610 (1541617) | 1541617..1542693 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| NMU33_RS07615 (1542837) | 1542837..1543349 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| NMU33_RS07620 (1543336) | 1543336..1544094 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| NMU33_RS07625 (1544304) | 1544304..1545176 | - | 873 | WP_000503681.1 | nickel/cobalt efflux protein RcnA | - |
| NMU33_RS07630 (1545298) | 1545298..1545570 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| NMU33_RS07635 (1545601) | 1545601..1546830 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| NMU33_RS07640 (1546972) | 1546972..1547427 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| NMU33_RS07645 (1547531) | 1547531..1548394 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |