MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP100715 Location: 847708..859033 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain R17.5474 Replicon: chromosome
Accession: NZ_CP100715 Location: 847708..859033 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain R17.5474 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL730_RS04065 (843154) | 843154..844252 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| NL730_RS04070 (844262) | 844262..845779 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| NL730_RS04075 (845855) | 845855..846400 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| NL730_RS04080 (846665) | 846665..847423 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| NL730_RS04090 (847708) | 847708..848514 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| NL730_RS04095 (848789) | 848789..849040 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| NL730_RS04100 (849217) | 849217..849444 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| NL730_RS04105 (849444) | 849444..849842 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| NL730_RS04110 (850648) | 850648..851184 | + | 537 | WP_001038506.1 | hypothetical protein | VF |
| NL730_RS04115 (851231) | 851231..851863 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| NL730_RS04120 (852582) | 852582..853166 | + | 585 | WP_001244638.1 | hypothetical protein | VF |
| NL730_RS04125 (853286) | 853286..855775 | + | 2490 | WP_000705483.1 | hypothetical protein | VF |
| NL730_RS04130 (855816) | 855816..856559 | + | 744 | WP_000798504.1 | hypothetical protein | VF |
| NL730_RS04135 (856556) | 856556..857632 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| NL730_RS04140 (857776) | 857776..858288 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| NL730_RS04145 (858275) | 858275..859033 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| NL730_RS04150 (859243) | 859243..860097 | - | 855 | WP_000503685.1 | nickel/cobalt efflux protein RcnA | - |
| NL730_RS04155 (860219) | 860219..860491 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| NL730_RS04160 (860522) | 860522..861751 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| NL730_RS04165 (861893) | 861893..862348 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| NL730_RS04170 (862452) | 862452..863315 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |