MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP100691 Location: 927343..938668 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain R17.3867 Replicon: chromosome
Accession: NZ_CP100691 Location: 927343..938668 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain R17.3867 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL690_RS04485 (922789) | 922789..923887 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| NL690_RS04490 (923897) | 923897..925414 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| NL690_RS04495 (925490) | 925490..926035 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| NL690_RS04500 (926300) | 926300..927058 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| NL690_RS04510 (927343) | 927343..928149 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| NL690_RS04515 (928424) | 928424..928675 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| NL690_RS04520 (928852) | 928852..929079 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| NL690_RS04525 (929079) | 929079..929477 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| NL690_RS04530 (930283) | 930283..930819 | + | 537 | WP_001038506.1 | hypothetical protein | VF |
| NL690_RS04535 (930866) | 930866..931498 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| NL690_RS04540 (932217) | 932217..932801 | + | 585 | WP_001244638.1 | hypothetical protein | VF |
| NL690_RS04545 (932921) | 932921..935410 | + | 2490 | WP_000705483.1 | hypothetical protein | VF |
| NL690_RS04550 (935451) | 935451..936194 | + | 744 | WP_000798504.1 | hypothetical protein | VF |
| NL690_RS04555 (936191) | 936191..937267 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| NL690_RS04560 (937411) | 937411..937923 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| NL690_RS04565 (937910) | 937910..938668 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| NL690_RS04570 (938878) | 938878..939738 | - | 861 | WP_000503707.1 | nickel/cobalt efflux protein RcnA | - |
| NL690_RS04575 (939861) | 939861..940133 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| NL690_RS04580 (940164) | 940164..941393 | - | 1230 | WP_000036837.1 | amino acid permease | - |
| NL690_RS04585 (941535) | 941535..941990 | - | 456 | WP_017465480.1 | multidrug/biocide efflux PACE transporter | - |
| NL690_RS04590 (942094) | 942094..942957 | + | 864 | WP_001270777.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.003 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |