MGE detailed information
MGE type: Conjugative plasmid MGE length: 112664 bp
Accession: NZ_CP100546 Location: 1..112664 Organism: Escherichia coli strain LH09-a Replicon: plasmid pLH09-a-B
Accession: NZ_CP100546 Location: 1..112664 Organism: Escherichia coli strain LH09-a Replicon: plasmid pLH09-a-B
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLZ06_RS23085 (46) | 46..1077 | + | 1032 | WP_000907870.1 | plasmid replication initiator RepA | - |
| NLZ06_RS23090 (2100) | 2100..2900 | - | 801 | Protein_1 | IS91 family transposase ISSbo1 | Transposase |
| NLZ06_RS23095 (3039) | 3039..3584 | + | 546 | WP_249960467.1 | plasmid pRiA4b ORF-3 family protein | - |
| NLZ06_RS23100 (3721) | 3721..4293 | + | 573 | WP_001493762.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| NLZ06_RS23105 (4330) | 4330..5721 | + | 1392 | WP_014839878.1 | ISKra4 family transposase ISKpn19 | Transposase |
| NLZ06_RS23110 (5859) | 5859..8825 | - | 2967 | WP_001138014.1 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| NLZ06_RS23115 (8829) | 8829..9389 | - | 561 | WP_001161490.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| NLZ06_RS23120 (9565) | 9565..9915 | - | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| NLZ06_RS23125 (10118) | 10118..11131 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| NLZ06_RS23130 (11288) | 11288..11761 | + | 474 | WP_000777555.1 | Dihydrofolate reductase type 1 | ARG |
| NLZ06_RS23135 (11854) | 11854..12156 | + | 303 | Protein_10 | nucleotidyltransferase domain-containing protein | - |
| NLZ06_RS23140 (12305) | 12305..13165 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| NLZ06_RS23145 (13348) | 13348..13905 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| NLZ06_RS23150 (14069) | 14069..17074 | + | 3006 | WP_001143760.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| NLZ06_RS23155 (17107) | 17107..17520 | - | 414 | Protein_14 | IS91 family transposase ISSbo1 | Transposase |
| NLZ06_RS23160 (17501) | 17501..17773 | - | 273 | WP_000019163.1 | hypothetical protein | - |
| NLZ06_RS23165 (17988) | 17988..18803 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| NLZ06_RS23170 (18890) | 18890..19132 | + | 243 | Protein_17 | phosphoglucosamine mutase | - |
| NLZ06_RS23175 (19368) | 19368..20513 | - | 1146 | Protein_18 | IS91 family transposase ISVsa3 | Transposase |
| NLZ06_RS23180 (20871) | 20871..21140 | + | 270 | WP_000079941.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| NLZ06_RS23185 (21140) | 21140..21418 | + | 279 | WP_244442846.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| NLZ06_RS23190 (21458) | 21458..22306 | + | 849 | WP_021265674.1 | 3'-5' exonuclease | - |
| NLZ06_RS23195 (22423) | 22423..22896 | + | 474 | WP_001334658.1 | hypothetical protein | - |
| NLZ06_RS23200 (23373) | 23373..23639 | - | 267 | WP_000955263.1 | hypothetical protein | - |
| NLZ06_RS23205 (23639) | 23639..24133 | - | 495 | WP_001459505.1 | hypothetical protein | - |
| NLZ06_RS23210 (24189) | 24189..24791 | - | 603 | WP_000517695.1 | ProQ/FINO family protein | - |
| NLZ06_RS23215 (25145) | 25145..26491 | + | 1347 | WP_001132032.1 | protein YagA | - |
| NLZ06_RS23220 (26770) | 26770..28650 | + | 1881 | WP_001283341.1 | colicin Ia central receptor-binding domain-containing protein | - |
| NLZ06_RS23225 (28668) | 28668..29015 | - | 348 | WP_000762570.1 | colicin 1B immunity protein | - |
| NLZ06_RS23230 (29134) | 29134..29482 | + | 349 | Protein_29 | DUF6404 family protein | - |
| NLZ06_RS23235 (29502) | 29502..30092 | - | 591 | WP_000194553.1 | hypothetical protein | - |
| NLZ06_RS23240 (30092) | 30092..30349 | - | 258 | WP_000371888.1 | hypothetical protein | - |
| NLZ06_RS23245 (30700) | 30700..31701 | + | 1002 | WP_000774874.1 | DUF4238 domain-containing protein | - |
| NLZ06_RS23250 (31877) | 31877..32221 | - | 345 | WP_000793307.1 | hypothetical protein | - |
| NLZ06_RS23255 (32720) | 32720..32974 | - | 255 | WP_000678527.1 | hypothetical protein | - |
| NLZ06_RS23260 (33019) | 33019..33945 | - | 927 | WP_001290416.1 | hypothetical protein | - |
| NLZ06_RS23265 (34477) | 34477..34890 | + | 414 | WP_000465043.1 | hypothetical protein | - |
| NLZ06_RS23270 (34892) | 34892..35671 | + | 780 | WP_021537353.1 | site-specific integrase | - |
| NLZ06_RS23275 (35851) | 35851..36495 | + | 645 | WP_001144036.1 | ParA family protein | - |
| NLZ06_RS23280 (36582) | 36582..36890 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| NLZ06_RS23285 (37304) | 37304..38284 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| NLZ06_RS23290 (38277) | 38277..38693 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| NLZ06_RS23295 (38695) | 38695..39969 | - | 1275 | WP_025653366.1 | Y-family DNA polymerase | - |
| NLZ06_RS23300 (39969) | 39969..40406 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| NLZ06_RS23305 (40403) | 40403..40651 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| NLZ06_RS23310 (41069) | 41069..41971 | + | 903 | WP_000273918.1 | DUF1281 domain-containing protein | - |
| NLZ06_RS23315 (41968) | 41968..42279 | + | 312 | WP_010891263.1 | hypothetical protein | - |
| NLZ06_RS23320 (42356) | 42356..43039 | + | 684 | WP_000086178.1 | DNA methylase | - |
| NLZ06_RS23325 (43040) | 43040..43261 | + | 222 | WP_001104887.1 | hypothetical protein | - |
| NLZ06_RS23330 (43221) | 43221..43707 | + | 487 | Protein_49 | DUF1380 domain-containing protein | - |
| NLZ06_RS23335 (43758) | 43758..44528 | + | 771 | WP_001044393.1 | hypothetical protein | - |
| NLZ06_RS23340 (44946) | 44946..45371 | + | 426 | WP_001198886.1 | antirestriction protein | - |
| NLZ06_RS23345 (45418) | 45418..45840 | + | 423 | WP_000271729.1 | DUF1380 family protein | - |
| NLZ06_RS23350 (45837) | 45837..46028 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| NLZ06_RS23355 (46219) | 46219..46596 | - | 378 | WP_024126038.1 | hypothetical protein | - |
| NLZ06_RS23360 (46798) | 46798..47324 | + | 527 | Protein_55 | single-stranded DNA-binding protein | - |
| NLZ06_RS23365 (47382) | 47382..47615 | + | 234 | WP_000006014.1 | DUF905 domain-containing protein | - |
| NLZ06_RS23370 (47674) | 47674..49630 | + | 1957 | Protein_57 | ParB/RepB/Spo0J family partition protein | - |
| NLZ06_RS23375 (49685) | 49685..50119 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| NLZ06_RS23380 (50116) | 50116..50835 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| NLZ06_RS23385 (50832) | 50832..51428 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| NLZ06_RS23390 (51891) | 51891..52391 | + | 501 | WP_000117609.1 | antirestriction protein ArdA | - |
| NLZ06_RS23395 (53120) | 53120..53554 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| NLZ06_RS23400 (53646) | 53646..53912 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| NLZ06_RS23405 (53977) | 53977..54918 | + | 942 | WP_000038339.1 | Recombination-promoting nuclease RpnA | VF |
| NLZ06_RS23410 (54980) | 54980..55150 | + | 171 | WP_000150325.1 | hypothetical protein | - |
| NLZ06_RS23415 (55181) | 55181..55432 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| NLZ06_RS23420 (56012) | 56012..56860 | + | 849 | WP_001077047.1 | DUF4942 domain-containing protein | - |
| NLZ06_RS23425 (56945) | 56945..57280 | - | 336 | WP_000157098.1 | hypothetical protein | - |
| NLZ06_RS23430 (57514) | 57514..57846 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| NLZ06_RS23435 (57857) | 57857..60556 | + | 2700 | WP_024143648.1 | Protein TraI | Relaxase |
| NLZ06_RS23440 (60593) | 60593..62884 | - | 2292 | WP_001289276.1 | F-type conjugative transfer protein TrbC | - |
| NLZ06_RS23445 (62877) | 62877..63947 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| NLZ06_RS23450 (63966) | 63966..65174 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (65354) | 65354..65411 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (65354) | 65354..65411 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (65354) | 65354..65411 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (65354) | 65354..65411 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| NLZ06_RS23455 (65466) | 65466..65618 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| NLZ06_RS23460 (65690) | 65690..65941 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| NLZ06_RS23465 (66303) | 66303..66535 | + | 233 | Protein_76 | hypothetical protein | - |
| NLZ06_RS23470 (66600) | 66600..66776 | - | 177 | WP_001054904.1 | hypothetical protein | - |
| NLZ06_RS23475 (67168) | 67168..67377 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| NLZ06_RS23480 (67449) | 67449..68099 | - | 651 | WP_148374384.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| NLZ06_RS23485 (68173) | 68173..70341 | - | 2169 | WP_021537350.1 | DotA/TraY family protein | - |
| NLZ06_RS23490 (70438) | 70438..71022 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| NLZ06_RS23495 (71051) | 71051..72253 | - | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| NLZ06_RS23500 (72220) | 72220..72834 | - | 615 | WP_000337398.1 | IncI1-type conjugal transfer protein TraV | - |
| NLZ06_RS23505 (72834) | 72834..75878 | - | 3045 | WP_021265678.1 | IncI1-type conjugal transfer protein TraU | - |
| NLZ06_RS23510 (75968) | 75968..76768 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| NLZ06_RS23515 (76752) | 76752..76940 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| NLZ06_RS23520 (77004) | 77004..77408 | - | 405 | WP_000086958.1 | IncI1-type conjugal transfer protein TraR | - |
| NLZ06_RS23525 (77459) | 77459..77986 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| NLZ06_RS23530 (77986) | 77986..78690 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| NLZ06_RS23535 (78690) | 78690..79979 | - | 1290 | WP_001272003.1 | conjugal transfer protein TraO | - |
| NLZ06_RS23540 (79982) | 79982..80965 | - | 984 | WP_001191877.1 | High-affinity branched-chain amino acid transport ATP-binding protein LivF | VF |
| NLZ06_RS23545 (80976) | 80976..81668 | - | 693 | WP_000138550.1 | DotI/IcmL family type IV secretion protein | - |
| NLZ06_RS23550 (81665) | 81665..82012 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| NLZ06_RS23555 (82030) | 82030..85797 | - | 3768 | WP_001141527.1 | DUF5710 domain-containing protein | - |
| NLZ06_RS23560 (85886) | 85886..86437 | - | 552 | WP_000014583.1 | Phospholipase D | VF |
| NLZ06_RS23565 (86452) | 86452..86742 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| NLZ06_RS23570 (86739) | 86739..87887 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| NLZ06_RS23575 (87884) | 87884..88702 | - | 819 | WP_000646098.1 | Threonine/serine transporter TdcC | VF |
| NLZ06_RS23580 (88699) | 88699..89157 | - | 459 | WP_001079808.1 | L-threonine dehydratase catabolic TdcB | VF |
| NLZ06_RS23585 (89552) | 89552..90136 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| NLZ06_RS23590 (90196) | 90196..91398 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| NLZ06_RS23595 (91483) | 91483..91752 | - | 270 | Protein_102 | conjugal transfer protein TraE | - |
| NLZ06_RS23605 (93086) | 93086..93643 | - | 558 | Protein_104 | conjugal transfer protein TraE | - |
| NLZ06_RS23610 (93794) | 93794..94948 | - | 1155 | WP_001139957.1 | site-specific integrase | - |
| NLZ06_RS23615 (94947) | 94947..95231 | + | 285 | WP_187642572.1 | pilus assembly protein PilV | - |
| NLZ06_RS23620 (96140) | 96140..96388 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| NLZ06_RS23625 (96385) | 96385..97677 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| NLZ06_RS23630 (97677) | 97677..98333 | - | 657 | WP_001193553.1 | Protein mlc | VF |
| NLZ06_RS23635 (98318) | 98318..98878 | - | 561 | WP_000014116.1 | putative ABC transporter-binding protein | VF |
| NLZ06_RS23640 (98888) | 98888..99502 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| NLZ06_RS23645 (99520) | 99520..100617 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| NLZ06_RS23650 (100630) | 100630..102183 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| NLZ06_RS23655 (102194) | 102194..102646 | - | 453 | WP_001247334.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| NLZ06_RS23660 (102633) | 102633..103928 | - | 1296 | WP_000752772.1 | hypothetical protein | VF |
| NLZ06_RS23665 (103921) | 103921..105603 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| NLZ06_RS23670 (105617) | 105617..106054 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| NLZ06_RS23675 (106054) | 106054..107121 | - | 1068 | WP_001302629.1 | hypothetical protein | VF |
| NLZ06_RS23680 (107745) | 107745..108041 | - | 297 | WP_000494779.1 | hypothetical protein | - |
| NLZ06_RS23685 (108217) | 108217..108471 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| NLZ06_RS23690 (108633) | 108633..109184 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| NLZ06_RS23695 (109357) | 109357..110040 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| NLZ06_RS23700 (110294) | 110294..110827 | - | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| NLZ06_RS23705 (111269) | 111269..111556 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| NLZ06_RS23710 (111474) | 111474..111704 | - | 231 | WP_228772074.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli | Conjugative plasmid | TA6370, TA30448 | NC_023329 | 1..104399 | 0.009 |