MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP099705 Location: 878077..889402 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain 013+ Replicon: chromosome
Accession: NZ_CP099705 Location: 878077..889402 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain 013+ Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NG892_RS04275 (873523) | 873523..874621 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| NG892_RS04280 (874631) | 874631..876148 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| NG892_RS04285 (876224) | 876224..876769 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| NG892_RS04290 (877034) | 877034..877792 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| NG892_RS04300 (878077) | 878077..878883 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| NG892_RS04305 (879158) | 879158..879409 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| NG892_RS04310 (879586) | 879586..879813 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| NG892_RS04315 (879813) | 879813..880211 | + | 399 | WP_080247813.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| NG892_RS04320 (881017) | 881017..881553 | + | 537 | WP_001038506.1 | hypothetical protein | VF |
| NG892_RS04325 (881600) | 881600..882232 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| NG892_RS04330 (882951) | 882951..883535 | + | 585 | WP_001244638.1 | hypothetical protein | VF |
| NG892_RS04335 (883655) | 883655..886144 | + | 2490 | WP_000705483.1 | hypothetical protein | VF |
| NG892_RS04340 (886185) | 886185..886928 | + | 744 | WP_000798504.1 | hypothetical protein | VF |
| NG892_RS04345 (886925) | 886925..888001 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| NG892_RS04350 (888145) | 888145..888657 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| NG892_RS04355 (888644) | 888644..889402 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| NG892_RS04360 (889612) | 889612..890478 | - | 867 | WP_000503682.1 | nickel/cobalt efflux protein RcnA | - |
| NG892_RS04365 (890600) | 890600..890872 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| NG892_RS04370 (890903) | 890903..892132 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| NG892_RS04375 (892274) | 892274..892729 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| NG892_RS04380 (892833) | 892833..893696 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |