MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP098834 Location: 880107..891432 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain GD19PS1 Replicon: chromosome
Accession: NZ_CP098834 Location: 880107..891432 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain GD19PS1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFH28_RS04250 (875553) | 875553..876651 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| NFH28_RS04255 (876661) | 876661..878178 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| NFH28_RS04260 (878254) | 878254..878799 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| NFH28_RS04265 (879064) | 879064..879822 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| NFH28_RS04275 (880107) | 880107..880913 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| NFH28_RS04280 (881188) | 881188..881439 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| NFH28_RS04285 (881616) | 881616..881843 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| NFH28_RS04290 (881843) | 881843..882241 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| NFH28_RS04295 (883047) | 883047..883583 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| NFH28_RS04300 (883630) | 883630..884262 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| NFH28_RS04305 (884981) | 884981..885565 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| NFH28_RS04310 (885685) | 885685..888174 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| NFH28_RS04315 (888215) | 888215..888958 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| NFH28_RS04320 (888955) | 888955..890031 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| NFH28_RS04325 (890175) | 890175..890687 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| NFH28_RS04330 (890674) | 890674..891432 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| NFH28_RS04335 (891642) | 891642..892505 | - | 864 | WP_252321607.1 | nickel/cobalt efflux protein RcnA | - |
| NFH28_RS04340 (892627) | 892627..892899 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| NFH28_RS04345 (892930) | 892930..894159 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| NFH28_RS04350 (894301) | 894301..894756 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| NFH28_RS04355 (894860) | 894860..895723 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |