MGE detailed information
MGE type: Genomic_island MGE length: 11293 bp
Accession: NZ_CP098741 Location: 1399689..1410981 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain HJL222 Replicon: chromosome
Accession: NZ_CP098741 Location: 1399689..1410981 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain HJL222 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NCG87_RS06805 (1395599) | 1395599..1396054 | + | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| NCG87_RS06810 (1396196) | 1396196..1397425 | + | 1230 | WP_000036825.1 | amino acid permease | - |
| NCG87_RS06815 (1397456) | 1397456..1397728 | - | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| NCG87_RS06820 (1397850) | 1397850..1398734 | + | 885 | WP_000503677.1 | nickel/cobalt efflux protein RcnA | - |
| NCG87_RS06825 (1398944) | 1398944..1399702 | - | 759 | WP_000134792.1 | transcriptional regulator | - |
| NCG87_RS06830 (1399689) | 1399689..1400201 | - | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| NCG87_RS06835 (1400345) | 1400345..1401421 | - | 1077 | WP_000141329.1 | outer membrane protein | - |
| NCG87_RS06840 (1401418) | 1401418..1402161 | - | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| NCG87_RS06845 (1402202) | 1402202..1404691 | - | 2490 | WP_000705484.1 | Outer membrane usher protein PapC | VF |
| NCG87_RS06850 (1404811) | 1404811..1405395 | - | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| NCG87_RS06855 (1406114) | 1406114..1406746 | - | 633 | WP_000835265.1 | YfdX family protein | - |
| NCG87_RS06860 (1406793) | 1406793..1407329 | - | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| NCG87_RS06865 (1408009) | 1408009..1408467 | - | 459 | WP_000502119.1 | IS200-IS605 family transposase IS200F | Transposase |
| NCG87_RS06870 (1408847) | 1408847..1409245 | - | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| NCG87_RS06875 (1409245) | 1409245..1409472 | - | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| NCG87_RS06880 (1409649) | 1409649..1409900 | + | 252 | WP_001540858.1 | hypothetical protein | - |
| NCG87_RS06885 (1410175) | 1410175..1410981 | + | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| NCG87_RS06895 (1411266) | 1411266..1412024 | - | 759 | WP_000244329.1 | amidase activator ActS | - |
| NCG87_RS06900 (1412289) | 1412289..1412834 | + | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| NCG87_RS06905 (1412910) | 1412910..1414427 | - | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.004 |