MGE detailed information
MGE type: Conjugative plasmid MGE length: 109442 bp
Accession: NZ_CP098439 Location: 1..109442 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ATOMSal-L6 Replicon: plasmid unnamed1
Accession: NZ_CP098439 Location: 1..109442 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ATOMSal-L6 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9193_RS23070 (252) | 252..677 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| M9193_RS23075 (724) | 724..1146 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| M9193_RS23080 (1143) | 1143..1334 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| M9193_RS23085 (2369) | 2369..2599 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| M9193_RS23090 (2651) | 2651..4012 | + | 1362 | WP_000170714.1 | DUF3560 domain-containing protein | - |
| M9193_RS23095 (4060) | 4060..4623 | + | 564 | WP_001348621.1 | class I SAM-dependent methyltransferase | - |
| M9193_RS23100 (4649) | 4649..4885 | + | 237 | WP_032153960.1 | hypothetical protein | - |
| M9193_RS23105 (4774) | 4774..5055 | + | 282 | WP_072277694.1 | hypothetical protein | - |
| M9193_RS23110 (5296) | 5296..5502 | + | 207 | WP_000547975.1 | hypothetical protein | - |
| M9193_RS23115 (5528) | 5528..6067 | + | 540 | WP_000290841.1 | single-stranded DNA-binding protein | - |
| M9193_RS23120 (6130) | 6130..6363 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| M9193_RS23125 (6429) | 6429..8452 | + | 2024 | Protein_11 | ParB/RepB/Spo0J family partition protein | - |
| M9193_RS23130 (8521) | 8521..8955 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| M9193_RS23135 (8952) | 8952..9671 | + | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| - (9683) | 9683..9907 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (9683) | 9683..9907 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (9683) | 9683..9907 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (9683) | 9683..9907 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| M9193_RS23140 (9893) | 9893..10042 | + | 150 | Protein_14 | plasmid maintenance protein Mok | - |
| M9193_RS23145 (9984) | 9984..10109 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| M9193_RS23150 (10428) | 10428..10724 | - | 297 | Protein_16 | hypothetical protein | - |
| M9193_RS23155 (11024) | 11024..11320 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| M9193_RS23160 (11431) | 11431..12252 | + | 822 | WP_001234445.1 | DUF932 domain-containing protein | - |
| M9193_RS23165 (12549) | 12549..13139 | - | 591 | WP_000252683.1 | hypothetical protein | VF |
| M9193_RS23170 (13474) | 13474..13857 | + | 384 | WP_001354030.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| M9193_RS23175 (14051) | 14051..14722 | + | 672 | WP_000283561.1 | conjugal transfer transcriptional regulator TraJ | - |
| M9193_RS23180 (14859) | 14859..15086 | + | 228 | WP_000089263.1 | conjugal transfer relaxosome protein TraY | - |
| M9193_RS23185 (15119) | 15119..15478 | + | 360 | WP_001098992.1 | type IV conjugative transfer system pilin TraA | - |
| M9193_RS23190 (15493) | 15493..15804 | + | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| M9193_RS23195 (15826) | 15826..16392 | + | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| M9193_RS23200 (16379) | 16379..17107 | + | 729 | WP_001230772.1 | type-F conjugative transfer system secretin TraK | - |
| M9193_RS23205 (17107) | 17107..18558 | + | 1452 | WP_000146675.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| M9193_RS23210 (18548) | 18548..19114 | + | 567 | WP_000896599.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| M9193_RS23215 (19101) | 19101..19421 | + | 321 | WP_001057307.1 | conjugal transfer protein TrbD | - |
| M9193_RS23220 (19418) | 19418..19933 | + | 516 | WP_000809881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| M9193_RS23225 (20068) | 20068..20289 | + | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| M9193_RS23230 (20282) | 20282..20695 | + | 414 | WP_000549589.1 | hypothetical protein | - |
| M9193_RS23235 (20688) | 20688..21161 | + | 474 | WP_000549568.1 | hypothetical protein | - |
| M9193_RS23240 (21241) | 21241..21459 | + | 219 | WP_000556745.1 | hypothetical protein | - |
| M9193_RS23245 (21487) | 21487..21834 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| M9193_RS23250 (21960) | 21960..24590 | + | 2631 | WP_000069777.1 | type IV secretion system protein TraC | - |
| M9193_RS23255 (24587) | 24587..24973 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| M9193_RS23260 (24970) | 24970..25602 | + | 633 | WP_001203728.1 | type-F conjugative transfer system protein TraW | - |
| M9193_RS23265 (25599) | 25599..26591 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| M9193_RS23270 (26621) | 26621..26926 | + | 306 | WP_000224416.1 | hypothetical protein | - |
| M9193_RS23275 (26935) | 26935..27573 | + | 639 | WP_001080256.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| M9193_RS23280 (27570) | 27570..29420 | + | 1851 | WP_000821856.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| M9193_RS23285 (29447) | 29447..29704 | + | 258 | WP_000864353.1 | conjugal transfer protein TrbE | - |
| M9193_RS23290 (29697) | 29697..30440 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| M9193_RS23295 (30454) | 30454..30798 | + | 345 | WP_000556796.1 | conjugal transfer protein TrbA | - |
| M9193_RS23300 (30917) | 30917..31201 | + | 285 | WP_000624194.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| M9193_RS23305 (31188) | 31188..31733 | + | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| M9193_RS23310 (31663) | 31663..32010 | + | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| M9193_RS23315 (31991) | 31991..32383 | + | 393 | WP_000660699.1 | F-type conjugal transfer protein TrbF | - |
| M9193_RS23320 (32370) | 32370..33743 | + | 1374 | WP_000944331.1 | conjugal transfer pilus assembly protein TraH | - |
| M9193_RS23325 (33740) | 33740..36562 | + | 2823 | WP_001007039.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| M9193_RS23330 (36578) | 36578..37063 | + | 486 | WP_000605870.1 | hypothetical protein | - |
| M9193_RS23335 (37112) | 37112..37843 | + | 732 | WP_000782451.1 | conjugal transfer complement resistance protein TraT | - |
| M9193_RS23340 (38046) | 38046..38783 | + | 738 | WP_000199905.1 | hypothetical protein | - |
| M9193_RS23345 (38834) | 38834..41113 | + | 2280 | WP_087760849.1 | Coupling protein TraD | VF |
| M9193_RS23350 (41113) | 41113..46383 | + | 5271 | WP_000948354.1 | Multifunctional conjugation protein TraI | Relaxase |
| M9193_RS23355 (46403) | 46403..47149 | + | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| M9193_RS23360 (47208) | 47208..48068 | + | 861 | WP_000704523.1 | Quorum-quenching protein AidA | VF |
| M9193_RS23365 (48171) | 48171..48731 | + | 561 | WP_000139323.1 | fertility inhibition protein FinO | - |
| M9193_RS23370 (48860) | 48860..49072 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| M9193_RS23375 (49317) | 49317..49778 | + | 462 | WP_001233838.1 | thermonuclease family protein | - |
| M9193_RS23380 (49824) | 49824..50033 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| M9193_RS23385 (50071) | 50071..50661 | + | 591 | WP_000766807.1 | DUF2726 domain-containing protein | - |
| M9193_RS23390 (50901) | 50901..51155 | + | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
| M9193_RS23395 (51393) | 51393..51467 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| M9193_RS23400 (51460) | 51460..52317 | + | 858 | WP_000130643.1 | incFII family plasmid replication initiator RepA | - |
| M9193_RS23405 (53255) | 53255..53908 | + | 654 | WP_000616800.1 | type II CAAX endopeptidase family protein | - |
| M9193_RS23410 (54001) | 54001..54258 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| M9193_RS23415 (54191) | 54191..54592 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| M9193_RS23420 (54841) | 54841..55256 | + | 416 | Protein_70 | IS1-like element IS1B family transposase | - |
| M9193_RS23425 (55292) | 55292..55837 | - | 546 | Protein_71 | Tn3 family transposase TnpA_Tn3 | Transposase |
| M9193_RS23430 (55903) | 55903..56607 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| M9193_RS23435 (56678) | 56678..57064 | - | 387 | Protein_73 | Transposon Tn10 TetD protein | VF |
| M9193_RS23440 (57152) | 57152..57745 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| M9193_RS23445 (57858) | 57858..59063 | - | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| M9193_RS23450 (59145) | 59145..59768 | + | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| M9193_RS23455 (59746) | 59746..60432 | - | 687 | WP_001284954.1 | winged helix-turn-helix domain-containing protein | - |
| M9193_RS23460 (60440) | 60440..60826 | - | 387 | WP_000460651.1 | hypothetical protein | - |
| M9193_RS23465 (60819) | 60819..61082 | - | 264 | WP_049802299.1 | antibiotic biosynthesis monooxygenase | - |
| M9193_RS23475 (62047) | 62047..62175 | - | 129 | Protein_81 | IS481 family transposase | - |
| M9193_RS23480 (62208) | 62208..63377 | - | 1170 | WP_001072355.1 | hypothetical protein | - |
| M9193_RS23485 (63909) | 63909..64177 | + | 269 | Protein_83 | type II toxin-antitoxin system ParD family antitoxin | - |
| M9193_RS23490 (64164) | 64164..64453 | + | 290 | Protein_84 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| M9193_RS23495 (64520) | 64520..64702 | + | 183 | WP_042344623.1 | hypothetical protein | - |
| M9193_RS23500 (64823) | 64823..65563 | + | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| M9193_RS23505 (65848) | 65848..66825 | - | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| M9193_RS23510 (67571) | 67571..67894 | + | 324 | Protein_88 | IS21 family transposase IS21 | Transposase |
| M9193_RS23515 (67896) | 67896..68000 | + | 105 | Protein_89 | AAA family ATPase | - |
| M9193_RS23520 (68061) | 68061..68574 | + | 514 | Protein_90 | DUF4113 domain-containing protein | - |
| M9193_RS23530 (69831) | 69831..70721 | + | 891 | WP_001368304.1 | putative periplasmic iron-binding protein | VF |
| M9193_RS23535 (70721) | 70721..71548 | + | 828 | WP_000983710.1 | Manganese transport system ATP-binding protein MntB | VF |
| M9193_RS23540 (71545) | 71545..72402 | + | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| M9193_RS23545 (72399) | 72399..73256 | + | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| M9193_RS23550 (73491) | 73491..73748 | - | 258 | Protein_96 | Tn3 family transposase | - |
| M9193_RS23555 (73746) | 73746..74159 | + | 414 | Protein_97 | phosphopyruvate hydratase | - |
| M9193_RS23560 (74500) | 74500..74880 | + | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| M9193_RS23565 (75260) | 75260..76453 | - | 1194 | WP_000095526.1 | MFS transporter | - |
| M9193_RS23570 (76589) | 76589..78313 | + | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| M9193_RS23575 (78314) | 78314..79261 | + | 948 | WP_000011908.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| M9193_RS23580 (79261) | 79261..81003 | + | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| M9193_RS23585 (81000) | 81000..82333 | + | 1334 | Protein_103 | L-lysine N6-monooxygenase | VF |
| M9193_RS23590 (82359) | 82359..84560 | + | 2202 | WP_000973519.1 | Ferric aerobactin receptor | VF |
| M9193_RS23595 (84940) | 84940..85637 | + | 698 | WP_223155668.1 | IS1-like element IS1A family transposase | - |
| M9193_RS23600 (85891) | 85891..86913 | - | 1023 | WP_000361402.1 | helicase UvrD | - |
| M9193_RS23605 (86898) | 86898..88463 | - | 1566 | WP_001128474.1 | AAA family ATPase | - |
| M9193_RS23610 (88538) | 88538..88954 | - | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| M9193_RS23615 (88951) | 88951..89181 | - | 231 | WP_001261286.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| M9193_RS23620 (89562) | 89562..93356 | + | 3795 | WP_001144732.1 | hypothetical protein | - |
| M9193_RS23625 (93401) | 93401..93817 | - | 417 | WP_001034046.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| M9193_RS23630 (93814) | 93814..94044 | - | 231 | WP_001261278.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| M9193_RS23635 (94309) | 94309..94809 | + | 501 | WP_000528931.1 | HEPN family nuclease | - |
| M9193_RS23640 (94822) | 94822..95595 | + | 774 | WP_000905949.1 | hypothetical protein | - |
| M9193_RS23645 (95762) | 95762..96895 | + | 1134 | WP_000545987.1 | DUF3800 domain-containing protein | - |
| M9193_RS23650 (96929) | 96929..97417 | - | 489 | WP_011254646.1 | hypothetical protein | - |
| M9193_RS23655 (98008) | 98008..98226 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| M9193_RS23660 (98228) | 98228..98533 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| M9193_RS23665 (98534) | 98534..99340 | + | 807 | WP_000016982.1 | site-specific integrase | - |
| M9193_RS23670 (100114) | 100114..100869 | + | 756 | WP_000852145.1 | replication initiation protein RepE | - |
| M9193_RS23675 (101457) | 101457..102623 | + | 1167 | WP_000772446.1 | hypothetical protein | VF |
| M9193_RS23680 (102623) | 102623..103594 | + | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| M9193_RS23685 (104461) | 104461..105363 | + | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| M9193_RS23690 (105360) | 105360..105671 | + | 312 | WP_011254640.1 | hypothetical protein | - |
| M9193_RS23695 (105748) | 105748..106431 | + | 684 | WP_000086185.1 | DNA methylase | - |
| M9193_RS23700 (106432) | 106432..106653 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| M9193_RS23705 (106583) | 106583..107101 | + | 519 | WP_123325260.1 | DUF1380 family protein | - |
| M9193_RS23710 (107152) | 107152..107928 | + | 777 | WP_001753849.1 | hypothetical protein | - |
| M9193_RS23715 (108121) | 108121..109233 | - | 1113 | WP_001300563.1 | IS4 family transposase IS421 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|