MGE detailed information
MGE type: Genomic_island MGE length: 12038 bp
Accession: NZ_CP098438 Location: 889478..901515 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ATOMSal-L6 Replicon: chromosome
Accession: NZ_CP098438 Location: 889478..901515 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ATOMSal-L6 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9193_RS04255 (884924) | 884924..886022 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| M9193_RS04260 (886032) | 886032..887549 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| M9193_RS04265 (887625) | 887625..888170 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| M9193_RS04270 (888435) | 888435..889193 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| M9193_RS04280 (889478) | 889478..890284 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| M9193_RS04285 (890559) | 890559..890810 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| M9193_RS04290 (890987) | 890987..891214 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| M9193_RS04295 (891214) | 891214..891612 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| M9193_RS04300 (891992) | 891992..892450 | + | 459 | WP_000502119.1 | IS200-IS605 family transposase IS200F | Transposase |
| M9193_RS04305 (893130) | 893130..893666 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| M9193_RS04310 (893713) | 893713..894345 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| M9193_RS04315 (895064) | 895064..895648 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| M9193_RS04320 (895768) | 895768..898257 | + | 2490 | WP_000705484.1 | Outer membrane usher protein PapC | VF |
| M9193_RS04325 (898298) | 898298..899041 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| M9193_RS04330 (899038) | 899038..900114 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| M9193_RS04335 (900258) | 900258..900770 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| M9193_RS04340 (900757) | 900757..901515 | + | 759 | WP_000134792.1 | transcriptional regulator | - |
| M9193_RS04345 (901725) | 901725..902609 | - | 885 | WP_000503677.1 | nickel/cobalt efflux protein RcnA | - |
| M9193_RS04350 (902731) | 902731..903003 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| M9193_RS04355 (903034) | 903034..904263 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| M9193_RS04360 (904405) | 904405..904860 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| M9193_RS04365 (904964) | 904964..905827 | + | 864 | WP_001270763.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.002 |