MGE detailed information
MGE type: Genomic_island MGE length: 10581 bp
Accession: NZ_CP091547 Location: 3852931..3863511 Organism: Salmonella enterica strain 1559 Replicon: chromosome
Accession: NZ_CP091547 Location: 3852931..3863511 Organism: Salmonella enterica strain 1559 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L4413_RS19035 (3848847) | 3848847..3849302 | + | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| L4413_RS19040 (3849444) | 3849444..3850673 | + | 1230 | WP_000036825.1 | amino acid permease | - |
| L4413_RS19045 (3850704) | 3850704..3850976 | - | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| L4413_RS19050 (3851098) | 3851098..3851976 | + | 879 | WP_001675932.1 | nickel/cobalt efflux protein RcnA | - |
| L4413_RS19055 (3852186) | 3852186..3852944 | - | 759 | WP_000134791.1 | transcriptional regulator | - |
| L4413_RS19060 (3852931) | 3852931..3853443 | - | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| L4413_RS19065 (3853587) | 3853587..3854663 | - | 1077 | WP_000141329.1 | outer membrane protein | - |
| L4413_RS19070 (3854660) | 3854660..3855403 | - | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| L4413_RS19075 (3855444) | 3855444..3857933 | - | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| L4413_RS19080 (3858053) | 3858053..3858637 | - | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| L4413_RS19085 (3859356) | 3859356..3859988 | - | 633 | WP_000835265.1 | YfdX family protein | - |
| L4413_RS19090 (3860035) | 3860035..3860571 | - | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| L4413_RS19095 (3861377) | 3861377..3861775 | - | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| L4413_RS19100 (3861775) | 3861775..3862002 | - | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| L4413_RS19105 (3862179) | 3862179..3862430 | + | 252 | WP_001540858.1 | hypothetical protein | - |
| L4413_RS19110 (3862705) | 3862705..3863511 | + | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| L4413_RS19120 (3863796) | 3863796..3864554 | - | 759 | WP_000244329.1 | amidase activator ActS | - |
| L4413_RS19125 (3864819) | 3864819..3865364 | + | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| L4413_RS19130 (3865440) | 3865440..3866957 | - | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.002 |