MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 103306 bp
Accession: NZ_CP091422 Location: 918939..1022244 Organism: Streptococcus suis strain LSM157 Replicon: chromosome
Accession: NZ_CP091422 Location: 918939..1022244 Organism: Streptococcus suis strain LSM157 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L3X06_RS04490 (L3X06_04490) | 914027..914674 | + | 648 | WP_012775132.1 | Maf family protein | - |
| L3X06_RS04495 (L3X06_04495) | 914726..915214 | + | 489 | WP_012775131.1 | YkgJ family cysteine cluster protein | - |
| L3X06_RS04500 (L3X06_04500) | 915314..916165 | + | 852 | WP_011922485.1 | ribosome biogenesis GTPase YlqF | - |
| L3X06_RS04505 (L3X06_04505) | 916152..916925 | + | 774 | WP_011922484.1 | ribonuclease HII | - |
| L3X06_RS04510 (L3X06_04510) | 916928..917938 | + | 1011 | WP_011922483.1 | YdcF family protein | - |
| L3X06_RS04515 (L3X06_04515) | 917971..918621 | - | 651 | WP_002936498.1 | hemolysin III family protein | - |
| L3X06_RS04520 (L3X06_04520) | 918611..919162 | - | 552 | WP_011922482.1 | DUF1836 domain-containing protein | - |
| L3X06_RS04525 (L3X06_04525) | 919270..920928 | - | 1659 | WP_011922481.1 | FAD-dependent oxidoreductase | - |
| L3X06_RS04530 (L3X06_04530) | 920925..921248 | - | 324 | WP_012775130.1 | rhodanese-like domain-containing protein | - |
| L3X06_RS04535 (L3X06_04535) | 921355..921615 | + | 261 | WP_009909865.1 | metal-sensitive transcriptional regulator | - |
| L3X06_RS04540 (L3X06_04540) | 921626..922183 | + | 558 | WP_011922479.1 | Maltose O-acetyltransferase | VF |
| L3X06_RS04545 (L3X06_04545) | 922242..923084 | + | 843 | WP_012775129.1 | DNA-processing protein DprA | - |
| L3X06_RS04550 (L3X06_04550) | 923177..925270 | + | 2094 | WP_012775128.1 | type I DNA topoisomerase | - |
| L3X06_RS04555 (L3X06_04555) | 925847..926341 | + | 495 | WP_002936486.1 | 50S ribosomal protein L10 | - |
| L3X06_RS04560 (L3X06_04560) | 926407..926772 | + | 366 | WP_002936483.1 | 50S ribosomal protein L7/L12 | - |
| L3X06_RS04565 (L3X06_04565) | 926971..927144 | + | 174 | WP_012775127.1 | hypothetical protein | - |
| L3X06_RS04570 (L3X06_04570) | 927141..927959 | + | 819 | WP_011922472.1 | replication initiator protein A | - |
| L3X06_RS04575 (L3X06_04575) | 928108..929463 | + | 1356 | WP_011922470.1 | DNA (cytosine-5-)-methyltransferase | - |
| L3X06_RS04580 (L3X06_04580) | 929447..929875 | + | 429 | WP_011922469.1 | hypothetical protein | - |
| L3X06_RS04585 (L3X06_04585) | 929886..930269 | + | 384 | WP_012775126.1 | hypothetical protein | - |
| L3X06_RS04590 (L3X06_04590) | 930278..930511 | + | 234 | WP_001005708.1 | hypothetical protein | - |
| L3X06_RS04595 (L3X06_04595) | 930514..931098 | + | 585 | WP_043029013.1 | CPBP family intramembrane metalloprotease | - |
| L3X06_RS04600 (L3X06_04600) | 931176..931664 | + | 489 | WP_043029014.1 | hypothetical protein | - |
| L3X06_RS04605 (L3X06_04605) | 931664..933481 | + | 1818 | WP_043029015.1 | type IV secretory system conjugative DNA transfer family protein | - |
| L3X06_RS04610 (L3X06_04610) | 933499..933741 | + | 243 | WP_001072182.1 | hypothetical protein | - |
| L3X06_RS04615 (L3X06_04615) | 933760..934614 | + | 855 | WP_011922462.1 | conjugal transfer protein TrbL | - |
| L3X06_RS04620 (L3X06_04620) | 934676..935029 | + | 354 | WP_012775123.1 | PrgI family protein | - |
| L3X06_RS04625 (L3X06_04625) | 934986..937337 | + | 2352 | WP_044672521.1 | ATPase AAA | - |
| L3X06_RS04630 (L3X06_04630) | 937339..940140 | + | 2802 | WP_012775599.1 | phage tail tip lysozyme | - |
| L3X06_RS04635 (L3X06_04635) | 940202..941047 | - | 846 | WP_012775600.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| L3X06_RS04640 (L3X06_04640) | 941044..941634 | - | 591 | WP_012775601.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | Antitoxin Detail |
| L3X06_RS04645 (L3X06_04645) | 941915..946810 | + | 4896 | WP_106474375.1 | Agglutinin receptor | VF |
| L3X06_RS04650 (L3X06_04650) | 946811..947002 | + | 192 | WP_011922455.1 | calcium-binding protein | - |
| L3X06_RS04655 (L3X06_04655) | 946986..947537 | + | 552 | WP_012775120.1 | hypothetical protein | - |
| L3X06_RS04660 (L3X06_04660) | 947587..951435 | + | 3849 | Protein_872 | N-6 DNA methylase | - |
| L3X06_RS04665 (L3X06_04665) | 951859..951942 | + | 84 | WP_001814874.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| L3X06_RS04670 (L3X06_04670) | 952067..952804 | + | 738 | WP_002321849.1 | rRNA adenine N-6-methyltransferase | ARG |
| L3X06_RS04675 (L3X06_04675) | 952974..953234 | + | 261 | Protein_875 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
| L3X06_RS04680 (L3X06_04680) | 953276..953650 | + | 375 | WP_001140406.1 | TnpV protein | - |
| L3X06_RS04685 (L3X06_04685) | 954017..955936 | + | 1920 | WP_012775603.1 | Tetracycline resistance protein TetO | VF |
| L3X06_RS04690 (L3X06_04690) | 955988..956176 | + | 189 | WP_079394308.1 | cysteine-rich KTR domain-containing protein | - |
| L3X06_RS04695 (L3X06_04695) | 956349..957212 | - | 864 | WP_002294505.1 | Aminoglycoside 6-adenylyltransferase | ARG |
| L3X06_RS04700 (L3X06_04700) | 957245..957979 | - | 735 | WP_000662263.1 | class I SAM-dependent methyltransferase | - |
| L3X06_RS04705 (L3X06_04705) | 957960..958829 | - | 870 | WP_000233000.1 | nucleotidyltransferase domain-containing protein | Toxin Detail |
| L3X06_RS04710 (L3X06_04710) | 958844..959068 | - | 225 | WP_000205227.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| L3X06_RS04715 (L3X06_04715) | 959211..960755 | - | 1545 | WP_106474374.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| L3X06_RS04720 (L3X06_04720) | 960775..961191 | - | 417 | WP_000323438.1 | hypothetical protein ; Integrase | Integrase |
| L3X06_RS04725 (L3X06_04725) | 961192..961689 | - | 498 | WP_002327635.1 | DNA recombinase | - |
| L3X06_RS04730 (L3X06_04730) | 962055..962888 | + | 834 | WP_225938940.1 | hypothetical protein | - |
| L3X06_RS04735 (L3X06_04735) | 963130..963984 | + | 855 | WP_225938941.1 | hypothetical protein | - |
| L3X06_RS04740 (L3X06_04740) | 963962..964561 | + | 600 | WP_011922444.1 | response regulator transcription factor | - |
| L3X06_RS04745 (L3X06_04745) | 965962..966600 | + | 639 | WP_011922443.1 | hypothetical protein | - |
| L3X06_RS04750 (L3X06_04750) | 966639..967715 | + | 1077 | WP_011922442.1 | toprim domain-containing protein | - |
| L3X06_RS04755 (L3X06_04755) | 967769..967996 | + | 228 | WP_011922441.1 | DUF5965 family protein | - |
| L3X06_RS04760 (L3X06_04760) | 967993..968382 | + | 390 | WP_011922440.1 | DUF5945 family protein | - |
| L3X06_RS04765 (L3X06_04765) | 968432..968722 | + | 291 | WP_024379089.1 | hypothetical protein | - |
| L3X06_RS04770 (L3X06_04770) | 968792..969268 | + | 477 | WP_012775115.1 | type II toxin-antitoxin system antitoxin PezA | Antitoxin Detail |
| L3X06_RS04775 (L3X06_04775) | 969268..970044 | + | 777 | WP_011922437.1 | type II toxin-antitoxin system toxin PezT | Toxin Detail |
| L3X06_RS04780 (L3X06_04780) | 970041..972128 | + | 2088 | WP_011922436.1 | AAA family ATPase | - |
| L3X06_RS04785 (L3X06_04785) | 972115..972738 | + | 624 | Protein_897 | UvrD-helicase domain-containing protein | - |
| L3X06_RS04790 (L3X06_04790) | 972738..972917 | + | 180 | Protein_898 | DUF961 family protein | - |
| L3X06_RS04795 (L3X06_04795) | 972946..974331 | + | 1386 | WP_000813488.1 | FtsK/SpoIIIE domain-containing protein | - |
| L3X06_RS04800 (L3X06_04800) | 974334..974486 | + | 153 | WP_000879507.1 | hypothetical protein | - |
| L3X06_RS04805 (L3X06_04805) | 974509..975714 | + | 1206 | WP_000398284.1 | MobT family relaxase | - |
| L3X06_RS04810 (L3X06_04810) | 975757..975978 | + | 222 | WP_001009056.1 | hypothetical protein | - |
| L3X06_RS04815 (L3X06_04815) | 976095..976592 | + | 498 | WP_000342539.1 | antirestriction protein ArdA | - |
| L3X06_RS04820 (L3X06_04820) | 976681..977073 | + | 393 | WP_000723888.1 | conjugal transfer protein | - |
| L3X06_RS04825 (L3X06_04825) | 977057..979504 | + | 2448 | WP_000331160.1 | ATP-binding protein | - |
| L3X06_RS04830 (L3X06_04830) | 979507..981684 | + | 2178 | WP_000804748.1 | membrane protein | - |
| L3X06_RS04835 (L3X06_04835) | 981681..982682 | + | 1002 | WP_000769868.1 | putative endopeptidase p60 | VF |
| L3X06_RS04840 (L3X06_04840) | 982679..983611 | + | 933 | WP_001224318.1 | conjugal transfer protein | - |
| L3X06_RS04845 (L3X06_04845) | 983856..983972 | + | 117 | WP_001814923.1 | tetracycline resistance determinant leader peptide | - |
| L3X06_RS04850 (L3X06_04850) | 983988..985907 | + | 1920 | WP_043029018.1 | Tetracycline resistance protein TetM from transposon TnFO1 | VF |
| L3X06_RS04855 (L3X06_04855) | 986026..986193 | + | 168 | WP_000336323.1 | cysteine-rich KTR domain-containing protein | - |
| L3X06_RS04860 (L3X06_04860) | 986253..986606 | - | 354 | WP_001227347.1 | helix-turn-helix transcriptional regulator | - |
| L3X06_RS04865 (L3X06_04865) | 987110..987532 | + | 423 | WP_000804885.1 | sigma-70 family RNA polymerase sigma factor | - |
| L3X06_RS04870 (L3X06_04870) | 987529..987759 | + | 231 | WP_000857133.1 | helix-turn-helix domain-containing protein | - |
| L3X06_RS04875 (L3X06_04875) | 987985..988236 | - | 252 | WP_001845478.1 | hypothetical protein | - |
| L3X06_RS04880 (L3X06_04880) | 988220..988423 | + | 204 | WP_000814511.1 | excisionase | - |
| L3X06_RS04885 (L3X06_04885) | 988505..989722 | + | 1218 | WP_001291561.1 | Transposase from transposon Tn916 ; Integrase | Integrase |
| L3X06_RS04890 (L3X06_04890) | 989844..990740 | - | 897 | WP_011922433.1 | ATP-binding protein | - |
| L3X06_RS04895 (L3X06_04895) | 991105..991470 | + | 366 | WP_012775113.1 | SAG1252 family conjugative relaxosome accessory protein | - |
| L3X06_RS04900 (L3X06_04900) | 991470..991835 | + | 366 | WP_011922431.1 | MobC family plasmid mobilization relaxosome protein | - |
| L3X06_RS04905 (L3X06_04905) | 991822..993687 | + | 1866 | WP_012775614.1 | SAG1250 family conjugative relaxase | - |
| L3X06_RS04910 (L3X06_04910) | 994009..994131 | + | 123 | WP_017370910.1 | hypothetical protein | - |
| L3X06_RS04915 (L3X06_04915) | 994232..995812 | + | 1581 | WP_225938943.1 | Multidrug resistance ABC transporter ATP-binding/permease protein BmrA | VF |
| L3X06_RS04920 (L3X06_04920) | 995825..996541 | + | 717 | WP_011922427.1 | putative ABC transporter ATP-binding protein YxlF | VF |
| L3X06_RS04925 (L3X06_04925) | 996531..997322 | + | 792 | WP_043029019.1 | ABC transporter permease | - |
| L3X06_RS04930 (L3X06_04930) | 997319..998026 | + | 708 | WP_012775617.1 | ABC transporter permease | - |
| L3X06_RS04935 (L3X06_04935) | 998057..998740 | + | 684 | WP_012775618.1 | Response regulator ArlR | VF |
| L3X06_RS04940 (L3X06_04940) | 998725..999822 | + | 1098 | WP_012775619.1 | ATP-binding protein | - |
| L3X06_RS04945 (L3X06_04945) | 1000152..1000373 | + | 222 | WP_011922422.1 | helix-turn-helix transcriptional regulator | - |
| L3X06_RS04950 (L3X06_04950) | 1000652..1000879 | + | 228 | WP_012775620.1 | DUF3173 family protein | - |
| L3X06_RS04955 (L3X06_04955) | 1000902..1002101 | + | 1200 | WP_012775621.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| L3X06_RS04960 (L3X06_04960) | 1002286..1003035 | + | 750 | WP_011922420.1 | HAD family hydrolase | - |
| L3X06_RS04965 (L3X06_04965) | 1003231..1004565 | + | 1335 | WP_043029020.1 | methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO | - |
| L3X06_RS04970 (L3X06_04970) | 1004642..1005478 | + | 837 | WP_014636394.1 | AraC family transcriptional regulator | - |
| L3X06_RS04975 (L3X06_04975) | 1005543..1006547 | + | 1005 | WP_012775107.1 | crosslink repair DNA glycosylase YcaQ family protein | - |
| L3X06_RS04980 (L3X06_04980) | 1006661..1007488 | + | 828 | WP_011922416.1 | alpha/beta hydrolase | - |
| L3X06_RS04985 (L3X06_04985) | 1007519..1008265 | + | 747 | WP_011922415.1 | alpha/beta hydrolase-fold protein | - |
| L3X06_RS04990 (L3X06_04990) | 1008283..1009449 | + | 1167 | WP_011922414.1 | carbamoyl phosphate synthase large subunit | - |
| L3X06_RS04995 (L3X06_04995) | 1009589..1009729 | + | 141 | WP_012775106.1 | hypothetical protein | - |
| L3X06_RS05000 (L3X06_05000) | 1009742..1010119 | + | 378 | WP_011922413.1 | NisI/SpaI family lantibiotic immunity lipoprotein | - |
| L3X06_RS05005 (L3X06_05005) | 1010140..1011042 | + | 903 | WP_011922412.1 | putative ABC transporter ATP-binding protein YxlF | VF |
| L3X06_RS05010 (L3X06_05010) | 1011044..1011790 | + | 747 | WP_011922411.1 | ABC transporter permease | - |
| L3X06_RS05015 (L3X06_05015) | 1011792..1012526 | + | 735 | WP_011922410.1 | ABC transporter permease | - |
| L3X06_RS05020 (L3X06_05020) | 1012662..1013414 | + | 753 | WP_011922409.1 | ABC transporter ATP-binding protein YxdL | VF |
| L3X06_RS05025 (L3X06_05025) | 1013415..1015385 | + | 1971 | WP_012775105.1 | FtsX-like permease family protein | - |
| L3X06_RS05030 (L3X06_05030) | 1015477..1015728 | + | 252 | WP_012775104.1 | DUF6290 family protein | Antitoxin Detail |
| L3X06_RS05035 (L3X06_05035) | 1015712..1015969 | + | 258 | WP_011922404.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| L3X06_RS05040 (L3X06_05040) | 1016008..1016673 | + | 666 | WP_012775103.1 | Response regulator protein GraR | VF |
| L3X06_RS05045 (L3X06_05045) | 1016670..1017611 | + | 942 | WP_012775102.1 | sensor histidine kinase | - |
| L3X06_RS05050 (L3X06_05050) | 1017687..1019195 | + | 1509 | WP_011922400.1 | Phosphomannomutase/phosphoglucomutase | VF |
| L3X06_RS05055 (L3X06_05055) | 1019265..1020335 | - | 1071 | WP_043029021.1 | Tyrosine recombinase XerS ; Integrase | Integrase |
| L3X06_RS05060 (L3X06_05060) | 1020694..1021308 | - | 615 | Protein_952 | Abi family protein | - |
| L3X06_RS05065 (L3X06_05065) | 1021350..1021655 | - | 306 | WP_015445217.1 | Abi family protein | - |
| L3X06_RS05070 (L3X06_05070) | 1022306..1022743 | - | 438 | WP_011922397.1 | AAA family ATPase | - |
| L3X06_RS05075 (L3X06_05075) | 1022808..1023548 | - | 741 | WP_011922396.1 | DUF3307 domain-containing protein | - |
| L3X06_RS05080 (L3X06_05080) | 1023552..1024220 | - | 669 | WP_011922395.1 | SatD family protein | - |
| L3X06_RS05085 (L3X06_05085) | 1024414..1025952 | - | 1539 | WP_011922394.1 | signal recognition particle protein | - |
| L3X06_RS05090 (L3X06_05090) | 1025965..1026297 | - | 333 | WP_002935001.1 | putative DNA-binding protein | - |
| L3X06_RS05095 (L3X06_05095) | 1026400..1027098 | - | 699 | WP_002943214.1 | GntR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|