MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP090539 Location: 960309..971634 Organism: Salmonella enterica strain 2016062-SE Replicon: chromosome
Accession: NZ_CP090539 Location: 960309..971634 Organism: Salmonella enterica strain 2016062-SE Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0F59_RS04680 (955755) | 955755..956853 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| L0F59_RS04685 (956863) | 956863..958380 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| L0F59_RS04690 (958456) | 958456..959001 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| L0F59_RS04695 (959266) | 959266..960024 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| L0F59_RS04705 (960309) | 960309..961115 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| L0F59_RS04710 (961390) | 961390..961641 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| L0F59_RS04715 (961818) | 961818..962045 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| L0F59_RS04720 (962045) | 962045..962443 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| L0F59_RS04725 (963249) | 963249..963785 | + | 537 | WP_001038506.1 | 2,5-diketo-D-gluconic acid reductase B | VF |
| L0F59_RS04730 (963832) | 963832..964464 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| L0F59_RS04735 (965183) | 965183..965767 | + | 585 | WP_001244638.1 | hypothetical protein | VF |
| L0F59_RS04740 (965887) | 965887..968376 | + | 2490 | WP_000705483.1 | Inner membrane transport protein YdhP | VF |
| L0F59_RS04745 (968417) | 968417..969160 | + | 744 | WP_000798504.1 | General stress protein 14 | VF |
| L0F59_RS04750 (969157) | 969157..970233 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| L0F59_RS04755 (970377) | 970377..970889 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| L0F59_RS04760 (970876) | 970876..971634 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| L0F59_RS04765 (971844) | 971844..972710 | - | 867 | WP_000503682.1 | nickel/cobalt efflux protein RcnA | - |
| L0F59_RS04770 (972832) | 972832..973104 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| L0F59_RS04775 (973135) | 973135..974364 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| L0F59_RS04780 (974506) | 974506..974961 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| L0F59_RS04785 (975065) | 975065..975928 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |