MGE detailed information
MGE type: Genomic_island MGE length: 10581 bp
Accession: NZ_CP090535 Location: 1038411..1048991 Organism: Salmonella enterica strain 2016089-SE Replicon: chromosome
Accession: NZ_CP090535 Location: 1038411..1048991 Organism: Salmonella enterica strain 2016089-SE Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0F58_RS05005 (1034345) | 1034345..1034800 | + | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| L0F58_RS05010 (1034942) | 1034942..1036171 | + | 1230 | WP_000036825.1 | amino acid permease | - |
| L0F58_RS05015 (1036202) | 1036202..1036474 | - | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| L0F58_RS05020 (1036596) | 1036596..1037456 | + | 861 | WP_000503684.1 | nickel/cobalt efflux protein RcnA | - |
| L0F58_RS05025 (1037666) | 1037666..1038424 | - | 759 | WP_000134791.1 | transcriptional regulator | - |
| L0F58_RS05030 (1038411) | 1038411..1038923 | - | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| L0F58_RS05035 (1039067) | 1039067..1040143 | - | 1077 | WP_000141329.1 | outer membrane protein | - |
| L0F58_RS05040 (1040140) | 1040140..1040883 | - | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| L0F58_RS05045 (1040924) | 1040924..1043413 | - | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| L0F58_RS05050 (1043533) | 1043533..1044117 | - | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| L0F58_RS05055 (1044836) | 1044836..1045468 | - | 633 | WP_000835265.1 | YfdX family protein | - |
| L0F58_RS05060 (1045515) | 1045515..1046051 | - | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| L0F58_RS05065 (1046857) | 1046857..1047255 | - | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| L0F58_RS05070 (1047255) | 1047255..1047482 | - | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| L0F58_RS05075 (1047659) | 1047659..1047910 | + | 252 | WP_001540858.1 | hypothetical protein | - |
| L0F58_RS05080 (1048185) | 1048185..1048991 | + | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| L0F58_RS05090 (1049276) | 1049276..1050034 | - | 759 | WP_000244329.1 | amidase activator ActS | - |
| L0F58_RS05095 (1050299) | 1050299..1050844 | + | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| L0F58_RS05100 (1050920) | 1050920..1052437 | - | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.002 |