MGE detailed information
MGE type: Genomic_island MGE length: 10581 bp
Accession: NZ_CP090533 Location: 3851334..3861914 Organism: Salmonella enterica strain 2017005-SE Replicon: chromosome
Accession: NZ_CP090533 Location: 3851334..3861914 Organism: Salmonella enterica strain 2017005-SE Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0F61_RS19010 (3847256) | 3847256..3847711 | + | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| L0F61_RS19015 (3847853) | 3847853..3849082 | + | 1230 | WP_000036825.1 | amino acid permease | - |
| L0F61_RS19020 (3849113) | 3849113..3849385 | - | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| L0F61_RS19025 (3849507) | 3849507..3850379 | + | 873 | WP_000503681.1 | nickel/cobalt efflux protein RcnA | - |
| L0F61_RS19030 (3850589) | 3850589..3851347 | - | 759 | WP_000134791.1 | transcriptional regulator | - |
| L0F61_RS19035 (3851334) | 3851334..3851846 | - | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| L0F61_RS19040 (3851990) | 3851990..3853066 | - | 1077 | WP_000141329.1 | outer membrane protein | - |
| L0F61_RS19045 (3853063) | 3853063..3853806 | - | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| L0F61_RS19050 (3853847) | 3853847..3856336 | - | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| L0F61_RS19055 (3856456) | 3856456..3857040 | - | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| L0F61_RS19060 (3857759) | 3857759..3858391 | - | 633 | WP_000835265.1 | YfdX family protein | - |
| L0F61_RS19065 (3858438) | 3858438..3858974 | - | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| L0F61_RS19070 (3859780) | 3859780..3860178 | - | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| L0F61_RS19075 (3860178) | 3860178..3860405 | - | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| L0F61_RS19080 (3860582) | 3860582..3860833 | + | 252 | WP_001540858.1 | hypothetical protein | - |
| L0F61_RS19085 (3861108) | 3861108..3861914 | + | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| L0F61_RS19095 (3862199) | 3862199..3862957 | - | 759 | WP_000244329.1 | amidase activator ActS | - |
| L0F61_RS19100 (3863222) | 3863222..3863767 | + | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| L0F61_RS19105 (3863843) | 3863843..3865360 | - | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.002 |