MGE detailed information

MGE type: Conjugative plasmid        MGE length: 147204 bp
Accession: NZ_CP090458        Location: 1..147204         Organism: Escherichia coli strain B379       Replicon: plasmid pB379_3


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LZ684_RS23840 (1) 1..858 + 858 WP_000130646.1 incFII family plasmid replication initiator RepA -
LZ684_RS23845 (1075) 1075..1752 + 678 WP_001682408.1 IS66 family transposase ISCro1 Transposase
LZ684_RS23850 (1752) 1752..2099 + 348 WP_000624622.1 IS66 family transposase ISCro1 Transposase
LZ684_RS23855 (2119) 2119..3690 + 1572 WP_000381395.1 IS66 family transposase ISCro1 Transposase
LZ684_RS23860 (4504) 4504..5157 + 654 WP_000616807.1 CPBP family intramembrane metalloprotease -
LZ684_RS23865 (5250) 5250..5507 + 258 WP_000557619.1 type II toxin-antitoxin system antitoxin PemI -
LZ684_RS23870 (5440) 5440..5841 + 402 WP_001398199.1 type II toxin-antitoxin system toxin endoribonuclease PemK -
LZ684_RS23875 (6090) 6090..6505 + 416 Protein_7 IS1-like element IS1B family transposase -
LZ684_RS23880 (6541) 6541..7086 - 546 Protein_8 Tn3 family transposase TnpA_Tn3 Transposase
LZ684_RS23885 (7152) 7152..7856 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
LZ684_RS23890 (7991) 7991..8086 + 96 WP_013362819.1 23S rRNA methyltransferase attenuation leader peptide -
LZ684_RS23895 (8212) 8212..8949 + 738 WP_013362818.1 Ribosomal RNA small subunit methyltransferase A ARG
LZ684_RS23900 (9579) 9579..10028 + 450 WP_013362817.1 hypothetical protein -
LZ684_RS23905 (9989) 9989..10330 + 342 WP_023909256.1 60 kDa chaperonin VF
LZ684_RS23910 (10605) 10605..12089 + 1485 WP_194280410.1 IS91 family transposase ISVsa3 Transposase
LZ684_RS23915 (12412) 12412..13116 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
LZ684_RS23920 (13182) 13182..13469 + 288 Protein_16 IS1380 family transposase ISEcp1 Transposase
LZ684_RS23925 (13719) 13719..14594 + 876 WP_001617865.1 Beta-lactamase CTX-M-97 ARG
LZ684_RS23930 (14629) 14629..15597 + 969 WP_013362812.1 IS5 family transposase IS903B Transposase
LZ684_RS23935 (15654) 15654..16226 - 573 Protein_19 IS1380 family transposase ISEcp1 Transposase
LZ684_RS23940 (16427) 16427..17458 + 1032 WP_014342102.1 Methyl-accepting chemotaxis protein McpQ VF
LZ684_RS23945 (17647) 17647..17856 - 210 Protein_21 dihydropteroate synthase -
LZ684_RS23950 (17850) 17850..18197 - 348 WP_000679427.1 Multidrug transporter EmrE ARG
LZ684_RS23955 (18389) 18389..19648 - 1260 WP_234679454.1 Multidrug resistance protein MdtL ARG
LZ684_RS23960 (19915) 19915..20469 - 555 WP_032488579.1 aminoglycoside N-acetyltransferase AAC(6')-Ib3 -
LZ684_RS23965 (20649) 20649..21329 + 681 Protein_25 IS91 family transposase ISAzo26 Transposase
LZ684_RS23970 (21394) 21394..22098 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
LZ684_RS23975 (22210) 22210..22914 + 705 WP_032199621.1 IS6 family transposase IS26 Transposase
LZ684_RS23980 (22969) 22969..23652 + 684 Protein_28 helicase RepA family protein -
LZ684_RS23985 (23639) 23639..24490 + 852 WP_000240536.1 replication protein C, IncQ-type -
LZ684_RS23990 (24798) 24798..25613 + 816 WP_001043265.1 Dihydropteroate synthase ARG
LZ684_RS23995 (25700) 25700..25942 + 243 Protein_31 phosphoglucosamine mutase -
LZ684_RS24000 (26178) 26178..27671 - 1494 WP_015344975.1 IS91 family transposase ISVsa3 Transposase
LZ684_RS24005 (27783) 27783..28088 - 306 WP_001255015.1 HTH-type transcriptional regulator CynR VF
LZ684_RS24010 (28116) 28116..29330 - 1215 WP_039026029.1 Inner membrane transport protein YdhC ARG
LZ684_RS24015 (29547) 29547..30431 - 885 WP_001447541.1 DUF3363 domain-containing protein -
LZ684_RS24020 (30462) 30462..31955 - 1494 WP_015344975.1 IS91 family transposase ISVsa3 Transposase
LZ684_RS24025 (32166) 32166..32390 - 225 WP_000743213.1 hypothetical protein -
LZ684_RS24030 (32387) 32387..33097 - 711 WP_194433555.1 Tn3 family transposase TnpR_TnEc1 Transposase
LZ684_RS24035 (33517) 33517..34422 + 906 WP_052259183.1 rRNA adenine N-6-methyltransferase ARG
LZ684_RS24040 (34573) 34573..34752 + 180 Protein_40 helix-turn-helix domain-containing protein -
LZ684_RS24045 (34817) 34817..35521 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
LZ684_RS24050 (35816) 35816..37030 + 1215 WP_001532073.1 type II site-specific deoxyribonuclease -
LZ684_RS24055 (37064) 37064..38497 - 1434 WP_001288435.1 DNA cytosine methyltransferase -
LZ684_RS24060 (38591) 38591..38863 + 273 Protein_44 IS1 family transposase -
LZ684_RS24065 (39120) 39120..39817 + 698 WP_095033700.1 IS1 family transposase IS1R Transposase
LZ684_RS24070 (39938) 39938..40776 - 839 Protein_46 Streptomycin 3''-adenylyltransferase ARG
LZ684_RS24075 (40925) 40925..41938 + 1014 WP_000845048.1 IS91 family transposase ISAzo26 Transposase
LZ684_RS24080 (42141) 42141..42377 + 237 Protein_48 DUF3330 domain-containing protein -
LZ684_RS24085 (42430) 42430..43134 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
LZ684_RS24090 (43195) 43195..43464 + 270 Protein_50 2-keto-3-deoxygluconate permease -
LZ684_RS24095 (43510) 43510..44262 - 753 WP_000562172.1 IclR family transcriptional regulator -
LZ684_RS24100 (44867) 44867..45151 + 285 WP_001387467.1 ribbon-helix-helix domain-containing protein Antitoxin Detail
LZ684_RS24105 (45151) 45151..45426 + 276 WP_000421272.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
LZ684_RS24110 (45532) 45532..45735 + 204 Protein_54 hypothetical protein -
LZ684_RS24115 (45860) 45860..45988 - 129 Protein_55 IS481 family transposase -
LZ684_RS24120 (46277) 46277..47191 - 915 WP_223429136.1 hypothetical protein -
LZ684_RS24130 (49059) 49059..49327 + 269 Protein_58 type II toxin-antitoxin system ParD family antitoxin -
LZ684_RS24135 (49314) 49314..49603 + 290 Protein_59 type II toxin-antitoxin system RelE/ParE family toxin -
LZ684_RS24140 (49670) 49670..49852 + 183 WP_042344623.1 hypothetical protein -
LZ684_RS24145 (49973) 49973..50713 + 741 WP_001066953.1 tyrosine-type recombinase/integrase -
LZ684_RS24150 (50998) 50998..51976 - 979 Protein_62 RepB family plasmid replication initiator protein -
LZ684_RS24155 (52722) 52722..53045 + 324 Protein_63 IS21 family transposase IS21 Transposase
LZ684_RS24160 (53047) 53047..53151 + 105 Protein_64 AAA family ATPase -
LZ684_RS24165 (53212) 53212..53725 + 514 Protein_65 DUF4113 domain-containing protein -
LZ684_RS24175 (54958) 54958..55872 + 915 WP_072644633.1 hypothetical protein VF
LZ684_RS24180 (55872) 55872..56699 + 828 WP_000983710.1 Vitamin B12 import ATP-binding protein BtuD VF
LZ684_RS24185 (56696) 56696..57553 + 858 WP_001101723.1 hypothetical protein ARG
LZ684_RS24190 (57550) 57550..58407 + 858 WP_000968139.1 hypothetical protein ARG
LZ684_RS24195 (58641) 58641..58898 - 258 Protein_71 transposase -
LZ684_RS24200 (58896) 58896..59309 + 414 Protein_72 phosphopyruvate hydratase -
LZ684_RS24205 (59650) 59650..60030 + 381 WP_001318207.1 fluoride efflux transporter CrcB -
LZ684_RS24210 (60410) 60410..61603 - 1194 WP_000095526.1 MFS transporter -
LZ684_RS24215 (61739) 61739..63463 + 1725 WP_000602863.1 N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase VF
LZ684_RS24220 (63464) 63464..64411 + 948 WP_000011908.1 N(6)-hydroxylysine O-acetyltransferase VF
LZ684_RS24225 (64411) 64411..66153 + 1743 WP_001015721.1 Aerobactin synthase VF
LZ684_RS24230 (66150) 66150..67483 + 1334 Protein_78 L-lysine N6-monooxygenase VF
LZ684_RS24235 (67509) 67509..69710 + 2202 WP_000973519.1 Vitamin B12 transporter BtuB VF
LZ684_RS24240 (70090) 70090..70787 + 698 WP_095033700.1 IS1 family transposase IS1R Transposase
LZ684_RS24245 (71041) 71041..72063 - 1023 WP_000361402.1 helicase UvrD -
LZ684_RS24250 (72048) 72048..73613 - 1566 WP_001128474.1 AAA family ATPase -
LZ684_RS24255 (73688) 73688..74104 - 417 WP_001034044.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
LZ684_RS24260 (74101) 74101..74331 - 231 WP_001261286.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin Detail
LZ684_RS24265 (74678) 74678..78472 + 3795 WP_001144732.1 hypothetical protein -
LZ684_RS24270 (78517) 78517..78933 - 417 WP_001034046.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
LZ684_RS24275 (78930) 78930..79160 - 231 WP_001261278.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin Detail
LZ684_RS24280 (79425) 79425..79925 + 501 WP_000528931.1 HEPN family nuclease -
LZ684_RS24285 (79938) 79938..80711 + 774 WP_000905949.1 hypothetical protein -
LZ684_RS24290 (80878) 80878..82011 + 1134 WP_001542067.1 DUF3800 domain-containing protein -
LZ684_RS24295 (82045) 82045..82533 - 489 WP_011254646.1 hypothetical protein -
LZ684_RS24300 (83125) 83125..83343 + 219 WP_000813634.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin Detail
LZ684_RS24305 (83345) 83345..83650 + 306 WP_001159868.1 type II toxin-antitoxin system toxin CcdB Toxin Detail
LZ684_RS24310 (83651) 83651..84457 + 807 WP_000016982.1 site-specific integrase -
LZ684_RS24315 (85231) 85231..85986 + 756 WP_000852146.1 replication initiation protein RepE -
LZ684_RS24320 (86574) 86574..87740 + 1167 WP_000772446.1 hypothetical protein VF
LZ684_RS24325 (87740) 87740..88711 + 972 WP_000817036.1 ParB/RepB/Spo0J family plasmid partition protein -
LZ684_RS24330 (89578) 89578..90480 + 903 WP_001348615.1 DUF1281 domain-containing protein -
LZ684_RS24335 (90477) 90477..90788 + 312 WP_011254640.1 hypothetical protein -
LZ684_RS24340 (90865) 90865..91548 + 684 WP_000086185.1 DNA methylase -
LZ684_RS24345 (91549) 91549..91770 + 222 WP_001104873.1 hypothetical protein -
LZ684_RS24350 (91700) 91700..92218 + 519 WP_123325260.1 DUF1380 family protein -
LZ684_RS24355 (92269) 92269..93045 + 777 WP_001753849.1 hypothetical protein -
LZ684_RS24360 (93462) 93462..93887 + 426 WP_001198928.1 antirestriction protein -
LZ684_RS24365 (93934) 93934..94356 + 423 WP_000271753.1 DUF1380 family protein -
LZ684_RS24370 (94353) 94353..94544 + 192 WP_001027516.1 hypothetical protein -
LZ684_RS24375 (94817) 94817..95065 - 249 WP_077249352.1 hypothetical protein -
LZ684_RS24380 (95582) 95582..95812 + 231 WP_000218642.1 hypothetical protein -
LZ684_RS24385 (95864) 95864..97225 + 1362 WP_000170695.1 DUF3560 domain-containing protein -
LZ684_RS24390 (97272) 97272..97835 + 564 WP_001298559.1 class I SAM-dependent methyltransferase -
LZ684_RS24395 (97921) 97921..98376 - 456 Protein_111 hypothetical protein -
LZ684_RS24400 (98678) 98678..99205 + 528 WP_000290834.1 single-stranded DNA-binding protein -
LZ684_RS24405 (99263) 99263..99496 + 234 WP_000006003.1 DUF905 family protein -
LZ684_RS24410 (99557) 99557..101580 + 2024 Protein_114 ParB/RepB/Spo0J family partition protein -
LZ684_RS24415 (101649) 101649..102083 + 435 WP_000845953.1 conjugation system SOS inhibitor PsiB -
LZ684_RS24420 (102080) 102080..102842 + 763 Protein_116 plasmid SOS inhibition protein A -
LZ684_RS24425 (102820) 102820..102999 - 180 WP_001309233.1 hypothetical protein -
- (102811) 102811..103035 + 225 NuclAT_0 - -
- (102811) 102811..103035 + 225 NuclAT_0 - -
- (102811) 102811..103035 + 225 NuclAT_0 - -
- (102811) 102811..103035 + 225 NuclAT_0 - -
LZ684_RS24430 (103021) 103021..103170 + 150 Protein_118 plasmid maintenance protein Mok -
LZ684_RS24435 (103112) 103112..103237 + 126 WP_001372321.1 type I toxin-antitoxin system Hok family toxin Toxin Detail
LZ684_RS24440 (103719) 103719..105290 - 1572 WP_000381395.1 IS66 family transposase ISCro1 Transposase
LZ684_RS24445 (105310) 105310..105657 - 348 WP_000624622.1 IS66 family transposase ISCro1 Transposase
LZ684_RS24450 (105657) 105657..106334 - 678 WP_001682408.1 IS66 family transposase ISCro1 Transposase
LZ684_RS24455 (106393) 106393..106559 - 167 Protein_123 hypothetical protein -
LZ684_RS24460 (106859) 106859..107155 + 297 WP_001272251.1 hypothetical protein -
LZ684_RS24465 (107266) 107266..108087 + 822 WP_001234445.1 DUF932 domain-containing protein -
LZ684_RS24470 (108384) 108384..108974 - 591 WP_000252683.1 hypothetical protein VF
LZ684_RS24475 (109309) 109309..109692 + 384 WP_001354030.1 conjugal transfer relaxosome DNA-binding protein TraM -
LZ684_RS24480 (109886) 109886..110557 + 672 WP_000283561.1 conjugal transfer transcriptional regulator TraJ -
LZ684_RS24485 (110694) 110694..110921 + 228 WP_000089263.1 conjugal transfer relaxosome protein TraY -
LZ684_RS24490 (110954) 110954..111313 + 360 WP_001098992.1 type IV conjugative transfer system pilin TraA -
LZ684_RS24495 (111328) 111328..111639 + 312 WP_000012113.1 type IV conjugative transfer system protein TraL -
LZ684_RS24500 (111661) 111661..112227 + 567 WP_000399780.1 type IV conjugative transfer system protein TraE -
LZ684_RS24505 (112214) 112214..112942 + 729 WP_001230772.1 type-F conjugative transfer system secretin TraK -
LZ684_RS24510 (112942) 112942..114393 + 1452 WP_000146675.1 F-type conjugal transfer pilus assembly protein TraB -
LZ684_RS24515 (114383) 114383..114949 + 567 WP_000896599.1 conjugal transfer pilus-stabilizing protein TraP -
LZ684_RS24520 (114936) 114936..115256 + 321 WP_001057307.1 conjugal transfer protein TrbD -
LZ684_RS24525 (115253) 115253..115768 + 516 WP_000809881.1 type IV conjugative transfer system lipoprotein TraV -
LZ684_RS24530 (115903) 115903..116124 + 222 WP_001278683.1 conjugal transfer protein TraR -
LZ684_RS24535 (116117) 116117..116530 + 414 WP_000549589.1 hypothetical protein -
LZ684_RS24540 (116523) 116523..116996 + 474 WP_000549568.1 hypothetical protein -
LZ684_RS24545 (117076) 117076..117294 + 219 WP_000556745.1 hypothetical protein -
LZ684_RS24550 (117322) 117322..117669 + 348 WP_000836682.1 hypothetical protein -
LZ684_RS24555 (117795) 117795..120425 + 2631 WP_000069777.1 type IV secretion system protein TraC -
LZ684_RS24560 (120422) 120422..120808 + 387 WP_000214084.1 type-F conjugative transfer system protein TrbI -
LZ684_RS24565 (120805) 120805..121437 + 633 WP_001203728.1 type-F conjugative transfer system protein TraW -
LZ684_RS24570 (121434) 121434..122426 + 993 WP_000830838.1 conjugal transfer pilus assembly protein TraU -
LZ684_RS24575 (122456) 122456..122761 + 306 WP_000224416.1 hypothetical protein -
LZ684_RS24580 (122770) 122770..123408 + 639 WP_001080256.1 type-F conjugative transfer system pilin assembly protein TrbC -
LZ684_RS24585 (123405) 123405..125255 + 1851 WP_000821856.1 type-F conjugative transfer system mating-pair stabilization protein TraN -
LZ684_RS24590 (125282) 125282..125539 + 258 WP_000864353.1 conjugal transfer protein TrbE -
LZ684_RS24595 (125532) 125532..126275 + 744 WP_001030371.1 type-F conjugative transfer system pilin assembly protein TraF -
LZ684_RS24600 (126289) 126289..126633 + 345 WP_000556796.1 conjugal transfer protein TrbA -
LZ684_RS24605 (126752) 126752..127036 + 285 WP_000624194.1 type-F conjugative transfer system pilin chaperone TraQ -
LZ684_RS24610 (127023) 127023..127568 + 546 WP_000059831.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
LZ684_RS24615 (127498) 127498..127845 + 348 WP_001309242.1 P-type conjugative transfer protein TrbJ -
LZ684_RS24620 (127826) 127826..128218 + 393 WP_000660699.1 F-type conjugal transfer protein TrbF -
LZ684_RS24625 (128205) 128205..129578 + 1374 WP_000944331.1 conjugal transfer pilus assembly protein TraH -
LZ684_RS24630 (129575) 129575..132397 + 2823 WP_001007039.1 conjugal transfer mating-pair stabilization protein TraG -
LZ684_RS24635 (132413) 132413..132898 + 486 WP_000605870.1 hypothetical protein -
LZ684_RS24640 (132947) 132947..133678 + 732 WP_000782451.1 conjugal transfer complement resistance protein TraT -
LZ684_RS24645 (133881) 133881..134618 + 738 WP_000199905.1 hypothetical protein -
LZ684_RS24650 (134669) 134669..136858 + 2190 WP_017901267.1 type IV conjugative transfer system coupling protein TraD -
LZ684_RS24655 (136858) 136858..142128 + 5271 WP_000948354.1 ATP-dependent RecD-like DNA helicase Relaxase
LZ684_RS24660 (142148) 142148..142894 + 747 WP_000205725.1 conjugal transfer pilus acetylase TraX -
LZ684_RS24665 (142953) 142953..143813 + 861 WP_000704523.1 hypothetical protein VF
LZ684_RS24670 (143916) 143916..144476 + 561 WP_000139323.1 fertility inhibition protein FinO -
LZ684_RS24675 (144605) 144605..144817 + 213 WP_001309245.1 ANR family transcriptional regulator -
LZ684_RS24680 (145062) 145062..145523 + 462 WP_001233838.1 thermonuclease family protein -
LZ684_RS24685 (145569) 145569..145778 + 210 WP_001298565.1 hemolysin expression modulator Hha -
LZ684_RS24690 (145816) 145816..146406 + 591 WP_000766807.1 DUF2726 domain-containing protein -
LZ684_RS24695 (146646) 146646..146900 + 255 WP_000083830.1 replication regulatory protein RepA -
LZ684_RS24700 (147007) 147007..147192 + 186 WP_012615301.1 plasmid copy control protein CopA -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance