MGE detailed information
MGE type: Conjugative plasmid MGE length: 147204 bp
Accession: NZ_CP090458 Location: 1..147204 Organism: Escherichia coli strain B379 Replicon: plasmid pB379_3
Accession: NZ_CP090458 Location: 1..147204 Organism: Escherichia coli strain B379 Replicon: plasmid pB379_3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ684_RS23840 () | 1..858 | + | 858 | WP_000130646.1 | incFII family plasmid replication initiator RepA | - |
| LZ684_RS23845 () | 1075..1752 | + | 678 | WP_001682408.1 | IS66 family transposase ISCro1 | Transposase |
| LZ684_RS23850 () | 1752..2099 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| LZ684_RS23855 () | 2119..3690 | + | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| LZ684_RS23860 () | 4504..5157 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| LZ684_RS23865 () | 5250..5507 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| LZ684_RS23870 () | 5440..5841 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| LZ684_RS23875 () | 6090..6505 | + | 416 | Protein_7 | IS1-like element IS1B family transposase | - |
| LZ684_RS23880 () | 6541..7086 | - | 546 | Protein_8 | Tn3 family transposase TnpA_Tn3 | Transposase |
| LZ684_RS23885 () | 7152..7856 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LZ684_RS23890 () | 7991..8086 | + | 96 | WP_013362819.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| LZ684_RS23895 () | 8212..8949 | + | 738 | WP_013362818.1 | Ribosomal RNA small subunit methyltransferase A | ARG |
| LZ684_RS23900 () | 9579..10028 | + | 450 | WP_013362817.1 | hypothetical protein | - |
| LZ684_RS23905 () | 9989..10330 | + | 342 | WP_023909256.1 | 60 kDa chaperonin | VF |
| LZ684_RS23910 () | 10605..12089 | + | 1485 | WP_194280410.1 | IS91 family transposase ISVsa3 | Transposase |
| LZ684_RS23915 () | 12412..13116 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LZ684_RS23920 () | 13182..13469 | + | 288 | Protein_16 | IS1380 family transposase ISEcp1 | Transposase |
| LZ684_RS23925 () | 13719..14594 | + | 876 | WP_001617865.1 | Beta-lactamase CTX-M-97 | ARG |
| LZ684_RS23930 () | 14629..15597 | + | 969 | WP_013362812.1 | IS5 family transposase IS903B | Transposase |
| LZ684_RS23935 () | 15654..16226 | - | 573 | Protein_19 | IS1380 family transposase ISEcp1 | Transposase |
| LZ684_RS23940 () | 16427..17458 | + | 1032 | WP_014342102.1 | Methyl-accepting chemotaxis protein McpQ | VF |
| LZ684_RS23945 () | 17647..17856 | - | 210 | Protein_21 | dihydropteroate synthase | - |
| LZ684_RS23950 () | 17850..18197 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| LZ684_RS23955 () | 18389..19648 | - | 1260 | WP_234679454.1 | Multidrug resistance protein MdtL | ARG |
| LZ684_RS23960 () | 19915..20469 | - | 555 | WP_032488579.1 | aminoglycoside N-acetyltransferase AAC(6')-Ib3 | - |
| LZ684_RS23965 () | 20649..21329 | + | 681 | Protein_25 | IS91 family transposase ISAzo26 | Transposase |
| LZ684_RS23970 () | 21394..22098 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LZ684_RS23975 () | 22210..22914 | + | 705 | WP_032199621.1 | IS6 family transposase IS26 | Transposase |
| LZ684_RS23980 () | 22969..23652 | + | 684 | Protein_28 | helicase RepA family protein | - |
| LZ684_RS23985 () | 23639..24490 | + | 852 | WP_000240536.1 | replication protein C, IncQ-type | - |
| LZ684_RS23990 () | 24798..25613 | + | 816 | WP_001043265.1 | Dihydropteroate synthase | ARG |
| LZ684_RS23995 () | 25700..25942 | + | 243 | Protein_31 | phosphoglucosamine mutase | - |
| LZ684_RS24000 () | 26178..27671 | - | 1494 | WP_015344975.1 | IS91 family transposase ISVsa3 | Transposase |
| LZ684_RS24005 () | 27783..28088 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| LZ684_RS24010 () | 28116..29330 | - | 1215 | WP_039026029.1 | Inner membrane transport protein YdhC | ARG |
| LZ684_RS24015 () | 29547..30431 | - | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| LZ684_RS24020 () | 30462..31955 | - | 1494 | WP_015344975.1 | IS91 family transposase ISVsa3 | Transposase |
| LZ684_RS24025 () | 32166..32390 | - | 225 | WP_000743213.1 | hypothetical protein | - |
| LZ684_RS24030 () | 32387..33097 | - | 711 | WP_194433555.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LZ684_RS24035 () | 33517..34422 | + | 906 | WP_052259183.1 | rRNA adenine N-6-methyltransferase | ARG |
| LZ684_RS24040 () | 34573..34752 | + | 180 | Protein_40 | helix-turn-helix domain-containing protein | - |
| LZ684_RS24045 () | 34817..35521 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LZ684_RS24050 () | 35816..37030 | + | 1215 | WP_001532073.1 | type II site-specific deoxyribonuclease | - |
| LZ684_RS24055 () | 37064..38497 | - | 1434 | WP_001288435.1 | DNA cytosine methyltransferase | - |
| LZ684_RS24060 () | 38591..38863 | + | 273 | Protein_44 | IS1 family transposase | - |
| LZ684_RS24065 () | 39120..39817 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| LZ684_RS24070 () | 39938..40776 | - | 839 | Protein_46 | Streptomycin 3''-adenylyltransferase | ARG |
| LZ684_RS24075 () | 40925..41938 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| LZ684_RS24080 () | 42141..42377 | + | 237 | Protein_48 | DUF3330 domain-containing protein | - |
| LZ684_RS24085 () | 42430..43134 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LZ684_RS24090 () | 43195..43464 | + | 270 | Protein_50 | 2-keto-3-deoxygluconate permease | - |
| LZ684_RS24095 () | 43510..44262 | - | 753 | WP_000562172.1 | IclR family transcriptional regulator | - |
| LZ684_RS24100 () | 44867..45151 | + | 285 | WP_001387467.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| LZ684_RS24105 () | 45151..45426 | + | 276 | WP_000421272.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LZ684_RS24110 () | 45532..45735 | + | 204 | Protein_54 | hypothetical protein | - |
| LZ684_RS24115 () | 45860..45988 | - | 129 | Protein_55 | IS481 family transposase | - |
| LZ684_RS24120 () | 46277..47191 | - | 915 | WP_223429136.1 | hypothetical protein | - |
| LZ684_RS24130 () | 49059..49327 | + | 269 | Protein_58 | type II toxin-antitoxin system ParD family antitoxin | - |
| LZ684_RS24135 () | 49314..49603 | + | 290 | Protein_59 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LZ684_RS24140 () | 49670..49852 | + | 183 | WP_042344623.1 | hypothetical protein | - |
| LZ684_RS24145 () | 49973..50713 | + | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| LZ684_RS24150 () | 50998..51976 | - | 979 | Protein_62 | RepB family plasmid replication initiator protein | - |
| LZ684_RS24155 () | 52722..53045 | + | 324 | Protein_63 | IS21 family transposase IS21 | Transposase |
| LZ684_RS24160 () | 53047..53151 | + | 105 | Protein_64 | AAA family ATPase | - |
| LZ684_RS24165 () | 53212..53725 | + | 514 | Protein_65 | DUF4113 domain-containing protein | - |
| LZ684_RS24175 () | 54958..55872 | + | 915 | WP_072644633.1 | hypothetical protein | VF |
| LZ684_RS24180 () | 55872..56699 | + | 828 | WP_000983710.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LZ684_RS24185 () | 56696..57553 | + | 858 | WP_001101723.1 | hypothetical protein | ARG |
| LZ684_RS24190 () | 57550..58407 | + | 858 | WP_000968139.1 | hypothetical protein | ARG |
| LZ684_RS24195 () | 58641..58898 | - | 258 | Protein_71 | transposase | - |
| LZ684_RS24200 () | 58896..59309 | + | 414 | Protein_72 | phosphopyruvate hydratase | - |
| LZ684_RS24205 () | 59650..60030 | + | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| LZ684_RS24210 () | 60410..61603 | - | 1194 | WP_000095526.1 | MFS transporter | - |
| LZ684_RS24215 () | 61739..63463 | + | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| LZ684_RS24220 () | 63464..64411 | + | 948 | WP_000011908.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| LZ684_RS24225 () | 64411..66153 | + | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| LZ684_RS24230 () | 66150..67483 | + | 1334 | Protein_78 | L-lysine N6-monooxygenase | VF |
| LZ684_RS24235 () | 67509..69710 | + | 2202 | WP_000973519.1 | Vitamin B12 transporter BtuB | VF |
| LZ684_RS24240 () | 70090..70787 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| LZ684_RS24245 () | 71041..72063 | - | 1023 | WP_000361402.1 | helicase UvrD | - |
| LZ684_RS24250 () | 72048..73613 | - | 1566 | WP_001128474.1 | AAA family ATPase | - |
| LZ684_RS24255 () | 73688..74104 | - | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LZ684_RS24260 () | 74101..74331 | - | 231 | WP_001261286.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| LZ684_RS24265 () | 74678..78472 | + | 3795 | WP_001144732.1 | hypothetical protein | - |
| LZ684_RS24270 () | 78517..78933 | - | 417 | WP_001034046.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LZ684_RS24275 () | 78930..79160 | - | 231 | WP_001261278.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| LZ684_RS24280 () | 79425..79925 | + | 501 | WP_000528931.1 | HEPN family nuclease | - |
| LZ684_RS24285 () | 79938..80711 | + | 774 | WP_000905949.1 | hypothetical protein | - |
| LZ684_RS24290 () | 80878..82011 | + | 1134 | WP_001542067.1 | DUF3800 domain-containing protein | - |
| LZ684_RS24295 () | 82045..82533 | - | 489 | WP_011254646.1 | hypothetical protein | - |
| LZ684_RS24300 () | 83125..83343 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| LZ684_RS24305 () | 83345..83650 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| LZ684_RS24310 () | 83651..84457 | + | 807 | WP_000016982.1 | site-specific integrase | - |
| LZ684_RS24315 () | 85231..85986 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| LZ684_RS24320 () | 86574..87740 | + | 1167 | WP_000772446.1 | hypothetical protein | VF |
| LZ684_RS24325 () | 87740..88711 | + | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| LZ684_RS24330 () | 89578..90480 | + | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| LZ684_RS24335 () | 90477..90788 | + | 312 | WP_011254640.1 | hypothetical protein | - |
| LZ684_RS24340 () | 90865..91548 | + | 684 | WP_000086185.1 | DNA methylase | - |
| LZ684_RS24345 () | 91549..91770 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| LZ684_RS24350 () | 91700..92218 | + | 519 | WP_123325260.1 | DUF1380 family protein | - |
| LZ684_RS24355 () | 92269..93045 | + | 777 | WP_001753849.1 | hypothetical protein | - |
| LZ684_RS24360 () | 93462..93887 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| LZ684_RS24365 () | 93934..94356 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| LZ684_RS24370 () | 94353..94544 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| LZ684_RS24375 () | 94817..95065 | - | 249 | WP_077249352.1 | hypothetical protein | - |
| LZ684_RS24380 () | 95582..95812 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| LZ684_RS24385 () | 95864..97225 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| LZ684_RS24390 () | 97272..97835 | + | 564 | WP_001298559.1 | class I SAM-dependent methyltransferase | - |
| LZ684_RS24395 () | 97921..98376 | - | 456 | Protein_111 | hypothetical protein | - |
| LZ684_RS24400 () | 98678..99205 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| LZ684_RS24405 () | 99263..99496 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| LZ684_RS24410 () | 99557..101580 | + | 2024 | Protein_114 | ParB/RepB/Spo0J family partition protein | - |
| LZ684_RS24415 () | 101649..102083 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| LZ684_RS24420 () | 102080..102842 | + | 763 | Protein_116 | plasmid SOS inhibition protein A | - |
| - () | 102811..103035 | + | 225 | NuclAT_0 | - | - |
| - () | 102811..103035 | + | 225 | NuclAT_0 | - | - |
| - () | 102811..103035 | + | 225 | NuclAT_0 | - | - |
| - () | 102811..103035 | + | 225 | NuclAT_0 | - | - |
| LZ684_RS24425 () | 102820..102999 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| - | 102968..103033 | - | 66 | - | - | Antitoxin Detail |
| LZ684_RS24430 () | 103021..103170 | + | 150 | Protein_118 | plasmid maintenance protein Mok | - |
| LZ684_RS24435 () | 103112..103237 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| LZ684_RS24440 () | 103719..105290 | - | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| LZ684_RS24445 () | 105310..105657 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| LZ684_RS24450 () | 105657..106334 | - | 678 | WP_001682408.1 | IS66 family transposase ISCro1 | Transposase |
| LZ684_RS24455 () | 106393..106559 | - | 167 | Protein_123 | hypothetical protein | - |
| LZ684_RS24460 () | 106859..107155 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| LZ684_RS24465 () | 107266..108087 | + | 822 | WP_001234445.1 | DUF932 domain-containing protein | - |
| LZ684_RS24470 () | 108384..108974 | - | 591 | WP_000252683.1 | hypothetical protein | VF |
| LZ684_RS24475 () | 109309..109692 | + | 384 | WP_001354030.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LZ684_RS24480 () | 109886..110557 | + | 672 | WP_000283561.1 | conjugal transfer transcriptional regulator TraJ | - |
| LZ684_RS24485 () | 110694..110921 | + | 228 | WP_000089263.1 | conjugal transfer relaxosome protein TraY | - |
| LZ684_RS24490 () | 110954..111313 | + | 360 | WP_001098992.1 | type IV conjugative transfer system pilin TraA | - |
| LZ684_RS24495 () | 111328..111639 | + | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| LZ684_RS24500 () | 111661..112227 | + | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| LZ684_RS24505 () | 112214..112942 | + | 729 | WP_001230772.1 | type-F conjugative transfer system secretin TraK | - |
| LZ684_RS24510 () | 112942..114393 | + | 1452 | WP_000146675.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| LZ684_RS24515 () | 114383..114949 | + | 567 | WP_000896599.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| LZ684_RS24520 () | 114936..115256 | + | 321 | WP_001057307.1 | conjugal transfer protein TrbD | - |
| LZ684_RS24525 () | 115253..115768 | + | 516 | WP_000809881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| LZ684_RS24530 () | 115903..116124 | + | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| LZ684_RS24535 () | 116117..116530 | + | 414 | WP_000549589.1 | hypothetical protein | - |
| LZ684_RS24540 () | 116523..116996 | + | 474 | WP_000549568.1 | hypothetical protein | - |
| LZ684_RS24545 () | 117076..117294 | + | 219 | WP_000556745.1 | hypothetical protein | - |
| LZ684_RS24550 () | 117322..117669 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| LZ684_RS24555 () | 117795..120425 | + | 2631 | WP_000069777.1 | type IV secretion system protein TraC | - |
| LZ684_RS24560 () | 120422..120808 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| LZ684_RS24565 () | 120805..121437 | + | 633 | WP_001203728.1 | type-F conjugative transfer system protein TraW | - |
| LZ684_RS24570 () | 121434..122426 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| LZ684_RS24575 () | 122456..122761 | + | 306 | WP_000224416.1 | hypothetical protein | - |
| LZ684_RS24580 () | 122770..123408 | + | 639 | WP_001080256.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LZ684_RS24585 () | 123405..125255 | + | 1851 | WP_000821856.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| LZ684_RS24590 () | 125282..125539 | + | 258 | WP_000864353.1 | conjugal transfer protein TrbE | - |
| LZ684_RS24595 () | 125532..126275 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| LZ684_RS24600 () | 126289..126633 | + | 345 | WP_000556796.1 | conjugal transfer protein TrbA | - |
| LZ684_RS24605 () | 126752..127036 | + | 285 | WP_000624194.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| LZ684_RS24610 () | 127023..127568 | + | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| LZ684_RS24615 () | 127498..127845 | + | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| LZ684_RS24620 () | 127826..128218 | + | 393 | WP_000660699.1 | F-type conjugal transfer protein TrbF | - |
| LZ684_RS24625 () | 128205..129578 | + | 1374 | WP_000944331.1 | conjugal transfer pilus assembly protein TraH | - |
| LZ684_RS24630 () | 129575..132397 | + | 2823 | WP_001007039.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| LZ684_RS24635 () | 132413..132898 | + | 486 | WP_000605870.1 | hypothetical protein | - |
| LZ684_RS24640 () | 132947..133678 | + | 732 | WP_000782451.1 | conjugal transfer complement resistance protein TraT | - |
| LZ684_RS24645 () | 133881..134618 | + | 738 | WP_000199905.1 | hypothetical protein | - |
| LZ684_RS24650 () | 134669..136858 | + | 2190 | WP_017901267.1 | type IV conjugative transfer system coupling protein TraD | - |
| LZ684_RS24655 () | 136858..142128 | + | 5271 | WP_000948354.1 | ATP-dependent RecD-like DNA helicase | Relaxase |
| LZ684_RS24660 () | 142148..142894 | + | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| LZ684_RS24665 () | 142953..143813 | + | 861 | WP_000704523.1 | hypothetical protein | VF |
| LZ684_RS24670 () | 143916..144476 | + | 561 | WP_000139323.1 | fertility inhibition protein FinO | - |
| LZ684_RS24675 () | 144605..144817 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| LZ684_RS24680 () | 145062..145523 | + | 462 | WP_001233838.1 | thermonuclease family protein | - |
| LZ684_RS24685 () | 145569..145778 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| LZ684_RS24690 () | 145816..146406 | + | 591 | WP_000766807.1 | DUF2726 domain-containing protein | - |
| LZ684_RS24695 () | 146646..146900 | + | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
| LZ684_RS24700 () | 147007..147192 | + | 186 | WP_012615301.1 | plasmid copy control protein CopA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|