MGE detailed information
MGE type: Conjugative plasmid MGE length: 106761 bp
Accession: NZ_CP090450 Location: 1..106761 Organism: Escherichia coli strain PT62 Replicon: plasmid pPT62-106kb
Accession: NZ_CP090450 Location: 1..106761 Organism: Escherichia coli strain PT62 Replicon: plasmid pPT62-106kb
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ175_RS22870 (1) | 1..978 | + | 978 | WP_000361612.1 | RepB family plasmid replication initiator protein | - |
| LZ175_RS22875 (1263) | 1263..2003 | - | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| LZ175_RS22880 (2124) | 2124..2319 | - | 196 | Protein_2 | serine/threonine protein kinase | - |
| LZ175_RS22885 (2406) | 2406..3095 | - | 690 | Protein_3 | IS3 family transposase ISEhe3 | Transposase |
| LZ175_RS22890 (3187) | 3187..3891 | + | 705 | Protein_4 | IS6 family transposase | - |
| LZ175_RS22895 (4081) | 4081..4896 | - | 816 | WP_000018329.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| LZ175_RS22900 (5047) | 5047..5753 | + | 707 | Protein_6 | IS6-like element IS26 family transposase | - |
| LZ175_RS22905 (6096) | 6096..7325 | + | 1230 | WP_032492336.1 | Putative bacilysin exporter BacE | ARG |
| LZ175_RS22910 (7471) | 7471..8331 | + | 861 | Protein_8 | SDR family oxidoreductase | - |
| LZ175_RS22915 (8476) | 8476..8550 | + | 75 | WP_234630905.1 | GrpB family protein | - |
| LZ175_RS22920 (9078) | 9078..9870 | + | 793 | Protein_10 | Dihydropteroate synthase | ARG |
| LZ175_RS22925 (10151) | 10151..10375 | + | 225 | Protein_11 | transposase | - |
| LZ175_RS22930 (10443) | 10443..11142 | + | 700 | Protein_12 | IS6-like element IS26 family transposase | - |
| LZ175_RS22935 (11208) | 11208..11753 | + | 546 | Protein_13 | Tn3 family transposase TnpA_Tn3 | Transposase |
| LZ175_RS22940 (11789) | 11789..12204 | - | 416 | Protein_14 | IS1-like element IS1B family transposase | - |
| LZ175_RS22945 (12453) | 12453..12854 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| LZ175_RS22950 (12787) | 12787..13044 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| LZ175_RS22955 (13137) | 13137..13790 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| LZ175_RS22960 (14728) | 14728..15585 | - | 858 | WP_039002220.1 | incFII family plasmid replication initiator RepA | - |
| LZ175_RS22965 (15578) | 15578..15652 | - | 75 | WP_061357229.1 | RepA leader peptide Tap | - |
| LZ175_RS22970 (15884) | 15884..16141 | - | 258 | WP_001541895.1 | replication regulatory protein RepA | - |
| LZ175_RS22975 (16409) | 16409..16558 | - | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| - (16602) | 16602..16663 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (16602) | 16602..16663 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (16602) | 16602..16663 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (16602) | 16602..16663 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| LZ175_RS22980 (17005) | 17005..17217 | - | 213 | WP_001541896.1 | ANR family transcriptional regulator | - |
| LZ175_RS22985 (17352) | 17352..17912 | - | 561 | WP_000139310.1 | fertility inhibition protein FinO | - |
| LZ175_RS22990 (17967) | 17967..18710 | - | 744 | WP_039002216.1 | conjugal transfer pilus acetylase TraX | - |
| LZ175_RS22995 (18730) | 18730..24000 | - | 5271 | WP_054377139.1 | Multifunctional conjugation protein TraI | Relaxase |
| LZ175_RS23000 (24000) | 24000..26189 | - | 2190 | WP_039002212.1 | type IV conjugative transfer system coupling protein TraD | - |
| LZ175_RS23005 (26442) | 26442..27173 | - | 732 | WP_000850424.1 | conjugal transfer complement resistance protein TraT | - |
| LZ175_RS23010 (27205) | 27205..27708 | - | 504 | WP_000605510.1 | hypothetical protein | - |
| LZ175_RS23015 (27723) | 27723..30545 | - | 2823 | WP_001007048.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| LZ175_RS23020 (30542) | 30542..31915 | - | 1374 | WP_170926237.1 | conjugal transfer pilus assembly protein TraH | - |
| LZ175_RS23025 (31915) | 31915..32277 | - | 363 | WP_001443292.1 | P-type conjugative transfer protein TrbJ | - |
| LZ175_RS23030 (32207) | 32207..32752 | - | 546 | WP_000052613.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| LZ175_RS23035 (32739) | 32739..32975 | - | 237 | WP_054377141.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| LZ175_RS23040 (33136) | 33136..33879 | - | 744 | WP_039002205.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| LZ175_RS23045 (33872) | 33872..34132 | - | 261 | WP_000864348.1 | conjugal transfer protein TrbE | - |
| LZ175_RS23050 (34159) | 34159..35967 | - | 1809 | WP_000821844.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| LZ175_RS23055 (35964) | 35964..36602 | - | 639 | WP_000777691.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LZ175_RS23060 (36611) | 36611..37603 | - | 993 | WP_023148235.1 | conjugal transfer pilus assembly protein TraU | - |
| LZ175_RS23065 (37600) | 37600..38232 | - | 633 | WP_001749440.1 | type-F conjugative transfer system protein TraW | - |
| LZ175_RS23070 (38229) | 38229..38615 | - | 387 | WP_039002198.1 | type-F conjugative transfer system protein TrbI | - |
| LZ175_RS23075 (38612) | 38612..41239 | - | 2628 | WP_001064265.1 | type IV secretion system protein TraC | - |
| LZ175_RS23080 (41399) | 41399..41620 | - | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| LZ175_RS23085 (41755) | 41755..42270 | - | 516 | WP_000724019.1 | type IV conjugative transfer system lipoprotein TraV | - |
| LZ175_RS23090 (42267) | 42267..42587 | - | 321 | WP_001057285.1 | conjugal transfer protein TrbD | - |
| LZ175_RS23095 (42574) | 42574..43161 | - | 588 | WP_000002772.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| LZ175_RS23100 (43151) | 43151..44578 | - | 1428 | WP_000146690.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| LZ175_RS23105 (44578) | 44578..45306 | - | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| LZ175_RS23110 (45293) | 45293..45859 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| LZ175_RS23115 (45881) | 45881..46192 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| LZ175_RS23120 (46197) | 46197..46559 | - | 363 | WP_000994784.1 | type IV conjugative transfer system pilin TraA | - |
| LZ175_RS23125 (46592) | 46592..46993 | - | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| LZ175_RS23130 (47086) | 47086..47775 | - | 690 | WP_039002187.1 | conjugal transfer transcriptional regulator TraJ | - |
| LZ175_RS23135 (47962) | 47962..48345 | - | 384 | WP_001151524.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LZ175_RS23140 (48666) | 48666..49268 | + | 603 | WP_000243712.1 | hypothetical protein | VF |
| LZ175_RS23145 (49565) | 49565..50386 | - | 822 | WP_001234469.1 | DUF932 domain-containing protein | - |
| LZ175_RS23150 (50508) | 50508..50795 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| LZ175_RS23155 (50820) | 50820..51026 | - | 207 | WP_000547968.1 | hypothetical protein | - |
| LZ175_RS23160 (51096) | 51096..51269 | + | 174 | Protein_58 | hypothetical protein | - |
| LZ175_RS23165 (51267) | 51267..51497 | - | 231 | WP_001426396.1 | hypothetical protein | - |
| LZ175_RS23170 (51717) | 51717..51842 | - | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| LZ175_RS23175 (51784) | 51784..51933 | - | 150 | Protein_61 | plasmid maintenance protein Mok | - |
| - (51919) | 51919..52143 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (51919) | 51919..52143 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (51919) | 51919..52143 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (51919) | 51919..52143 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| LZ175_RS23180 (51955) | 51955..52143 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| LZ175_RS23185 (52112) | 52112..52874 | - | 763 | Protein_63 | plasmid SOS inhibition protein A | - |
| LZ175_RS23190 (52871) | 52871..53305 | - | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| LZ175_RS23195 (53360) | 53360..55318 | - | 1959 | WP_039000998.1 | ParB/RepB/Spo0J family partition protein | - |
| LZ175_RS23200 (55383) | 55383..55616 | - | 234 | WP_000005987.1 | DUF905 family protein | - |
| LZ175_RS23205 (55673) | 55673..56212 | - | 540 | WP_032332913.1 | single-stranded DNA-binding protein | - |
| LZ175_RS23210 (56238) | 56238..56444 | - | 207 | WP_000275853.1 | hypothetical protein | - |
| LZ175_RS23215 (56685) | 56685..56912 | - | 228 | WP_071961421.1 | hypothetical protein | - |
| LZ175_RS23220 (57064) | 57064..57627 | - | 564 | WP_001315564.1 | class I SAM-dependent methyltransferase | - |
| LZ175_RS23225 (57675) | 57675..59036 | - | 1362 | WP_230069265.1 | DUF3560 domain-containing protein | - |
| LZ175_RS23230 (59088) | 59088..59318 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| LZ175_RS23235 (60353) | 60353..60544 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| LZ175_RS23240 (60541) | 60541..60963 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| LZ175_RS23245 (61010) | 61010..61435 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| LZ175_RS23250 (61852) | 61852..62628 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| LZ175_RS23255 (62679) | 62679..63197 | - | 519 | WP_123325260.1 | DUF1380 family protein | - |
| LZ175_RS23260 (63127) | 63127..63348 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| LZ175_RS23265 (63349) | 63349..64032 | - | 684 | WP_000086185.1 | DNA methylase | - |
| LZ175_RS23270 (64109) | 64109..64420 | - | 312 | WP_011254640.1 | hypothetical protein | - |
| LZ175_RS23275 (64417) | 64417..65319 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| LZ175_RS23280 (65737) | 65737..65985 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| LZ175_RS23285 (65982) | 65982..66419 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LZ175_RS23290 (66419) | 66419..67690 | + | 1272 | WP_000457518.1 | Y-family DNA polymerase | - |
| LZ175_RS23295 (67695) | 67695..68087 | - | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| LZ175_RS23300 (68092) | 68092..69063 | - | 972 | WP_001103690.1 | plasmid segregation protein ParM | - |
| LZ175_RS23305 (69285) | 69285..69929 | + | 645 | WP_000633913.1 | division plane positioning ATPase MipZ | - |
| LZ175_RS23310 (69923) | 69923..70198 | + | 276 | WP_000239529.1 | hypothetical protein | - |
| LZ175_RS23315 (70350) | 70350..71126 | - | 777 | Protein_89 | site-specific integrase | - |
| LZ175_RS23320 (71123) | 71123..71629 | - | 507 | WP_001505085.1 | hypothetical protein | - |
| LZ175_RS23325 (71620) | 71620..72324 | + | 705 | WP_001505086.1 | IS6-like element IS26 family transposase | - |
| LZ175_RS23330 (72473) | 72473..73798 | - | 1326 | WP_021512928.1 | reactive chlorine resistance oxidoreductase RclA | - |
| LZ175_RS23335 (73908) | 73908..74606 | + | 699 | Protein_93 | IS1 family transposase | - |
| LZ175_RS23340 (74707) | 74707..74988 | - | 282 | WP_000639434.1 | hypothetical protein | - |
| LZ175_RS23345 (75090) | 75090..75983 | - | 894 | Protein_95 | IS3 family transposase ISEhe3 | Transposase |
| LZ175_RS23350 (76051) | 76051..76869 | + | 819 | Protein_96 | IS30 family transposase IS30D | Transposase |
| LZ175_RS23360 (78204) | 78204..78353 | + | 150 | Protein_98 | IS30 family transposase IS30D | Transposase |
| LZ175_RS23365 (78778) | 78778..79062 | - | 285 | WP_000642771.1 | hypothetical protein | - |
| LZ175_RS23370 (79082) | 79082..80215 | - | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| LZ175_RS23375 (80478) | 80478..82115 | - | 1638 | WP_223201785.1 | hypothetical protein | - |
| LZ175_RS23380 (82166) | 82166..82996 | - | 831 | WP_223201786.1 | hypothetical protein | - |
| LZ175_RS23385 (83048) | 83048..83596 | - | 549 | WP_039002808.1 | hypothetical protein | - |
| LZ175_RS23390 (83902) | 83902..84132 | + | 231 | WP_001261287.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| LZ175_RS23395 (84129) | 84129..84545 | + | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LZ175_RS23400 (84707) | 84707..86845 | - | 2139 | WP_039002805.1 | AAA family ATPase | - |
| LZ175_RS23405 (87310) | 87310..88227 | + | 918 | WP_230069318.1 | nucleotidyltransferase | - |
| LZ175_RS23410 (88303) | 88303..88643 | + | 341 | Protein_108 | IS3 family transposase IS2 | Transposase |
| LZ175_RS23415 (88838) | 88838..89527 | + | 690 | WP_234630906.1 | IS3 family transposase IS2 | Transposase |
| LZ175_RS23420 (89680) | 89680..90573 | + | 894 | WP_001553853.1 | S-4TM family putative pore-forming effector | - |
| LZ175_RS23430 (91621) | 91621..94737 | - | 3117 | WP_039002890.1 | HsdR family type I site-specific deoxyribonuclease | - |
| LZ175_RS23435 (94859) | 94859..96142 | - | 1284 | WP_001617890.1 | restriction endonuclease subunit S | - |
| LZ175_RS23440 (96139) | 96139..97695 | - | 1557 | WP_001617892.1 | type I restriction-modification system subunit M | - |
| LZ175_RS23445 (97878) | 97878..98099 | + | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| LZ175_RS23450 (98099) | 98099..98479 | + | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| LZ175_RS23455 (98484) | 98484..98663 | + | 180 | WP_001513661.1 | hypothetical protein | - |
| LZ175_RS23460 (98691) | 98691..98969 | + | 279 | Protein_118 | pdcB | - |
| LZ175_RS23465 (98974) | 98974..99387 | + | 414 | Protein_119 | IS3 family transposase ISLad1 | Transposase |
| LZ175_RS23470 (99337) | 99337..99672 | - | 336 | WP_169329198.1 | type I deoxyribonuclease HsdR | - |
| LZ175_RS23475 (99882) | 99882..100860 | - | 979 | Protein_121 | IS5 family transposase IS5D | Transposase |
| LZ175_RS24120 (101164) | 101164..101818 | + | 655 | Protein_122 | amino acid permease | - |
| LZ175_RS24125 (101928) | 101928..102287 | + | 360 | WP_265180582.1 | hypothetical protein | - |
| LZ175_RS23485 (102292) | 102292..102504 | + | 213 | WP_234630904.1 | hypothetical protein | - |
| LZ175_RS23490 (102491) | 102491..103419 | + | 929 | Protein_125 | homocysteine S-methyltransferase | - |
| LZ175_RS23495 (103529) | 103529..103858 | - | 330 | Protein_126 | TOBE domain-containing protein | - |
| LZ175_RS24130 (103874) | 103874..104569 | - | 696 | Protein_127 | IS1 family transposase | - |
| LZ175_RS23510 (104717) | 104717..104875 | + | 159 | WP_228955855.1 | abortive infection family protein | - |
| LZ175_RS23515 (105034) | 105034..106006 | - | 973 | Protein_129 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|