MGE detailed information
MGE type: Integron MGE length: 82430 bp
Accession: NZ_CP090386 Location: 992905..1075334 Organism: Vibrio cholerae strain GXFL1-4 Replicon: chromosome
Accession: NZ_CP090386 Location: 992905..1075334 Organism: Vibrio cholerae strain GXFL1-4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LY388_RS04420 (LY388_04420) | 988088..988321 | + | 234 | WP_148525337.1 | hypothetical protein | - |
| LY388_RS04425 (LY388_04425) | 988905..989273 | + | 369 | WP_000881594.1 | Mor transcription activator family protein | - |
| LY388_RS04430 (LY388_04430) | 989260..989580 | + | 321 | WP_000189109.1 | Mor transcription activator family protein | - |
| LY388_RS04435 (LY388_04435) | 989599..990177 | + | 579 | WP_148525340.1 | glyoxalase | - |
| LY388_RS04440 (LY388_04440) | 990238..990609 | + | 372 | WP_000401420.1 | hypothetical protein | - |
| LY388_RS04445 (LY388_04445) | 990659..991018 | + | 360 | WP_000290080.1 | phage tail assembly protein | - |
| LY388_RS04450 (LY388_04450) | 991234..992163 | + | 930 | Protein_886 | tape measure protein | - |
| LY388_RS04455 (LY388_04455) | 992149..992844 | + | 696 | WP_032472361.1 | hypothetical protein | - |
| LY388_RS04460 (LY388_04460) | 992947..993141 | - | 195 | Protein_888 | hypothetical protein | - |
| LY388_RS04465 (LY388_04465) | 993292..993756 | - | 465 | WP_057563742.1 | GNAT family N-acetyltransferase | - |
| LY388_RS04470 (LY388_04470) | 993915..994454 | - | 540 | WP_057563841.1 | hydrolase | - |
| LY388_RS04475 (LY388_04475) | 994659..994805 | - | 147 | WP_234115992.1 | DUF645 family protein | - |
| LY388_RS04480 (LY388_04480) | 995154..995456 | - | 303 | WP_000229322.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LY388_RS04485 (LY388_04485) | 995444..995701 | - | 258 | WP_000861987.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| LY388_RS04490 (LY388_04490) | 996404..996586 | - | 183 | WP_148504768.1 | DUF645 family protein | - |
| LY388_RS04495 (LY388_04495) | 996940..997112 | - | 173 | Protein_895 | DUF645 family protein | - |
| LY388_RS04500 (LY388_04500) | 997173..997313 | - | 141 | Protein_896 | acetyltransferase | - |
| LY388_RS04505 (LY388_04505) | 997893..998492 | - | 600 | WP_057563830.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| LY388_RS04510 (LY388_04510) | 998732..998878 | - | 147 | Protein_898 | DUF645 family protein | - |
| LY388_RS04515 (LY388_04515) | 998939..999074 | - | 136 | Protein_899 | acetyltransferase | - |
| LY388_RS04520 (LY388_04520) | 999055..999174 | - | 120 | WP_080004135.1 | DUF3265 domain-containing protein | - |
| LY388_RS04525 (LY388_04525) | 999167..999868 | - | 702 | WP_001162671.1 | HNH endonuclease | - |
| LY388_RS04530 (LY388_04530) | 999898..1000008 | - | 111 | WP_196389672.1 | DUF3265 domain-containing protein | - |
| LY388_RS04535 (LY388_04535) | 1000493..1000912 | - | 420 | WP_114808795.1 | hypothetical protein | - |
| LY388_RS04540 (LY388_04540) | 1001111..1001215 | - | 105 | WP_199358725.1 | DUF645 family protein | - |
| LY388_RS04545 (LY388_04545) | 1001185..1001286 | - | 102 | Protein_905 | DUF645 family protein | - |
| LY388_RS04550 (LY388_04550) | 1001584..1002354 | - | 771 | WP_000797384.1 | alpha/beta hydrolase | - |
| LY388_RS04555 (LY388_04555) | 1002518..1002895 | - | 378 | WP_057552762.1 | hypothetical protein | - |
| LY388_RS04560 (LY388_04560) | 1003053..1003583 | - | 531 | WP_095467805.1 | hypothetical protein | - |
| LY388_RS04565 (LY388_04565) | 1003732..1004046 | - | 315 | WP_000071010.1 | DNA-binding transcriptional regulator | Antitoxin Detail |
| LY388_RS04570 (LY388_04570) | 1004033..1004365 | - | 333 | WP_000843587.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LY388_RS04575 (LY388_04575) | 1004555..1004692 | - | 138 | Protein_911 | cell shape-determining protein MreC | - |
| LY388_RS04580 (LY388_04580) | 1004667..1004720 | - | 54 | Protein_912 | DUF645 family protein | - |
| LY388_RS04585 (LY388_04585) | 1005076..1005585 | - | 510 | WP_142626918.1 | GNAT family N-acetyltransferase | - |
| LY388_RS04590 (LY388_04590) | 1005612..1005674 | - | 63 | Protein_914 | acetyltransferase | - |
| LY388_RS04595 (LY388_04595) | 1005731..1006201 | - | 471 | WP_154027101.1 | GNAT family N-acetyltransferase | - |
| LY388_RS04600 (LY388_04600) | 1006346..1007059 | - | 714 | WP_000123659.1 | Fic family protein | - |
| LY388_RS04605 (LY388_04605) | 1007313..1007491 | - | 179 | Protein_917 | DUF645 family protein | - |
| LY388_RS04610 (LY388_04610) | 1007660..1007731 | - | 72 | Protein_918 | acetyltransferase | - |
| LY388_RS04615 (LY388_04615) | 1007902..1008888 | + | 987 | WP_142578501.1 | hypothetical protein | VF |
| LY388_RS04620 (LY388_04620) | 1009526..1009885 | - | 360 | WP_142630507.1 | VOC family protein | - |
| LY388_RS04625 (LY388_04625) | 1010052..1010441 | - | 390 | WP_199358719.1 | VOC family protein | - |
| LY388_RS04630 (LY388_04630) | 1010645..1011181 | - | 537 | WP_019829641.1 | nucleotidyltransferase family protein | - |
| LY388_RS04635 (LY388_04635) | 1011322..1011645 | - | 324 | WP_265095101.1 | DUF4144 domain-containing protein | - |
| LY388_RS04640 (LY388_04640) | 1011791..1012252 | - | 462 | WP_234115901.1 | lipocalin family protein | - |
| LY388_RS04645 (LY388_04645) | 1012440..1013042 | - | 603 | WP_234115902.1 | hypothetical protein | - |
| LY388_RS04650 (LY388_04650) | 1013196..1013621 | - | 426 | WP_001891302.1 | hypothetical protein | - |
| LY388_RS04655 (LY388_04655) | 1013657..1013794 | - | 138 | WP_234115903.1 | acetyltransferase | - |
| LY388_RS04660 (LY388_04660) | 1013851..1014354 | - | 504 | WP_001158952.1 | DinB family protein | - |
| LY388_RS04665 (LY388_04665) | 1014527..1015279 | - | 753 | WP_001035644.1 | hypothetical protein | - |
| LY388_RS04670 (LY388_04670) | 1015426..1016196 | - | 771 | WP_234115904.1 | alpha/beta hydrolase | - |
| LY388_RS04675 (LY388_04675) | 1016366..1016866 | - | 501 | WP_199358713.1 | hypothetical protein | - |
| LY388_RS04680 (LY388_04680) | 1017020..1017526 | - | 507 | WP_002053776.1 | GNAT family N-acetyltransferase | - |
| LY388_RS04685 (LY388_04685) | 1017774..1017995 | - | 222 | WP_233357546.1 | DUF1289 domain-containing protein | - |
| LY388_RS04690 (LY388_04690) | 1018199..1018501 | - | 303 | WP_234115905.1 | pullulanase | - |
| LY388_RS04695 (LY388_04695) | 1019208..1019708 | - | 501 | WP_234115906.1 | hypothetical protein | - |
| LY388_RS04700 (LY388_04700) | 1020054..1020515 | - | 462 | WP_231501962.1 | lipocalin family protein | - |
| LY388_RS04705 (LY388_04705) | 1020765..1021049 | + | 285 | WP_000381183.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| LY388_RS04710 (LY388_04710) | 1021046..1021324 | + | 279 | WP_000578471.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| LY388_RS04715 (LY388_04715) | 1021463..1021930 | - | 468 | WP_199358709.1 | OsmC family protein | - |
| LY388_RS04720 (LY388_04720) | 1022082..1022549 | - | 468 | WP_233357544.1 | hypothetical protein | - |
| LY388_RS04725 (LY388_04725) | 1022651..1023205 | - | 555 | WP_142547361.1 | hypothetical protein | - |
| LY388_RS04730 (LY388_04730) | 1023473..1023709 | - | 237 | Protein_942 | DUF3709 domain-containing protein | - |
| LY388_RS04735 (LY388_04735) | 1023985..1024953 | - | 969 | WP_199358711.1 | YiiX/YebB-like N1pC/P60 family cysteine hydrolase | - |
| LY388_RS04740 (LY388_04740) | 1024971..1025033 | - | 63 | Protein_944 | acetyltransferase | - |
| LY388_RS04745 (LY388_04745) | 1025222..1025482 | - | 261 | WP_071170822.1 | DUF3709 domain-containing protein | - |
| LY388_RS04750 (LY388_04750) | 1025476..1025601 | - | 126 | WP_230080128.1 | DUF3709 domain-containing protein | - |
| LY388_RS04755 (LY388_04755) | 1025727..1026263 | - | 537 | WP_234115907.1 | hypothetical protein | - |
| LY388_RS04760 (LY388_04760) | 1026588..1026770 | - | 183 | WP_001898549.1 | DUF645 family protein | - |
| LY388_RS04765 (LY388_04765) | 1027066..1027644 | - | 579 | WP_172626090.1 | DJ-1/PfpI family protein | - |
| LY388_RS04770 (LY388_04770) | 1027921..1028052 | - | 132 | WP_230078670.1 | hypothetical protein | - |
| LY388_RS04775 (LY388_04775) | 1028363..1028542 | - | 180 | WP_001898535.1 | DUF645 family protein | - |
| LY388_RS04780 (LY388_04780) | 1028731..1028872 | - | 142 | Protein_952 | DUF3265 domain-containing protein | - |
| LY388_RS04785 (LY388_04785) | 1028862..1029440 | - | 579 | WP_148520472.1 | hypothetical protein | - |
| LY388_RS04790 (LY388_04790) | 1029600..1030013 | - | 414 | WP_199358715.1 | GNAT family N-acetyltransferase | - |
| LY388_RS04795 (LY388_04795) | 1030053..1030115 | - | 63 | Protein_955 | acetyltransferase | - |
| LY388_RS04800 (LY388_04800) | 1030561..1031331 | - | 771 | WP_199358716.1 | alpha/beta hydrolase | - |
| LY388_RS04805 (LY388_04805) | 1031495..1032193 | - | 699 | WP_046126203.1 | HAD family phosphatase | - |
| LY388_RS04810 (LY388_04810) | 1032303..1032761 | - | 459 | WP_080476635.1 | GNAT family N-acetyltransferase | - |
| LY388_RS04815 (LY388_04815) | 1032913..1033542 | - | 630 | WP_001009011.1 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | VF |
| LY388_RS04820 (LY388_04820) | 1033818..1033928 | - | 111 | WP_229765366.1 | DUF3709 domain-containing protein | - |
| LY388_RS04825 (LY388_04825) | 1034046..1034156 | - | 111 | Protein_961 | DUF3265 domain-containing protein | - |
| LY388_RS04830 (LY388_04830) | 1034161..1034406 | - | 246 | WP_199358704.1 | CopG family transcriptional regulator | Antitoxin Detail |
| LY388_RS04835 (LY388_04835) | 1034393..1034659 | - | 267 | WP_000589153.1 | BrnT family toxin | Toxin Detail |
| LY388_RS04840 (LY388_04840) | 1034726..1034836 | - | 111 | WP_142618709.1 | DUF3265 domain-containing protein | - |
| LY388_RS04845 (LY388_04845) | 1034833..1035402 | - | 570 | WP_000686204.1 | flavodoxin family protein | - |
| LY388_RS04850 (LY388_04850) | 1035551..1036555 | - | 1005 | WP_000964928.1 | LD-carboxypeptidase | - |
| LY388_RS04855 (LY388_04855) | 1036709..1037095 | - | 387 | WP_000703159.1 | VOC family protein | - |
| LY388_RS04860 (LY388_04860) | 1037353..1037574 | - | 222 | WP_032478112.1 | DUF1289 domain-containing protein | - |
| LY388_RS04865 (LY388_04865) | 1038207..1038683 | - | 477 | WP_001047180.1 | GNAT family N-acetyltransferase | - |
| LY388_RS04870 (LY388_04870) | 1039020..1039484 | + | 465 | WP_057563740.1 | hypothetical protein | - |
| LY388_RS04875 (LY388_04875) | 1039584..1039964 | - | 381 | WP_142618389.1 | hypothetical protein | - |
| LY388_RS04880 (LY388_04880) | 1040117..1040917 | - | 801 | WP_175242887.1 | PhzF family phenazine biosynthesis protein | - |
| LY388_RS04885 (LY388_04885) | 1041136..1041306 | - | 171 | WP_000483442.1 | DUF645 family protein | - |
| LY388_RS04890 (LY388_04890) | 1041604..1042152 | - | 549 | WP_000059064.1 | hypothetical protein | - |
| LY388_RS04895 (LY388_04895) | 1042300..1043052 | - | 753 | WP_199358706.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| LY388_RS04900 (LY388_04900) | 1043207..1043512 | - | 306 | WP_229380538.1 | hypothetical protein | - |
| LY388_RS04905 (LY388_04905) | 1043600..1044286 | - | 687 | WP_199358705.1 | hypothetical protein | VF |
| LY388_RS04910 (LY388_04910) | 1044493..1044645 | - | 153 | WP_114076109.1 | DUF645 family protein | - |
| LY388_RS04915 (LY388_04915) | 1045088..1045144 | - | 57 | Protein_979 | DUF645 family protein | - |
| LY388_RS04920 (LY388_04920) | 1045633..1045956 | - | 324 | WP_001893488.1 | DUF3709 domain-containing protein | - |
| LY388_RS04925 (LY388_04925) | 1046187..1046438 | - | 252 | WP_001128283.1 | hypothetical protein | - |
| LY388_RS04930 (LY388_04930) | 1046630..1046851 | - | 222 | WP_060531558.1 | hypothetical protein | - |
| LY388_RS04935 (LY388_04935) | 1047023..1047583 | - | 561 | WP_032475800.1 | nucleotidyltransferase domain-containing protein | - |
| LY388_RS04940 (LY388_04940) | 1048191..1048700 | - | 510 | WP_001033668.1 | ATPase AAA | - |
| LY388_RS04945 (LY388_04945) | 1048833..1049543 | - | 711 | WP_234115908.1 | hypothetical protein | - |
| LY388_RS04950 (LY388_04950) | 1049683..1050180 | - | 498 | WP_234115909.1 | GNAT family N-acetyltransferase | - |
| LY388_RS04955 (LY388_04955) | 1050204..1050326 | - | 123 | Protein_987 | DUF3265 domain-containing protein | - |
| LY388_RS04960 (LY388_04960) | 1050328..1051572 | - | 1245 | WP_072611699.1 | SIR2 family protein | - |
| LY388_RS04965 (LY388_04965) | 1051750..1052310 | - | 561 | WP_233357536.1 | O-methyltransferase | - |
| LY388_RS04970 (LY388_04970) | 1052484..1052918 | - | 435 | WP_000256034.1 | GNAT family N-acetyltransferase | - |
| LY388_RS04975 (LY388_04975) | 1053066..1053479 | - | 414 | WP_000049417.1 | VOC family protein | - |
| LY388_RS04980 (LY388_04980) | 1053516..1053614 | - | 99 | WP_234115910.1 | DUF3265 domain-containing protein | - |
| LY388_RS04985 (LY388_04985) | 1054132..1054647 | - | 516 | WP_199358678.1 | MazG-related protein | - |
| LY388_RS04990 (LY388_04990) | 1054767..1055255 | - | 489 | WP_234115911.1 | hypothetical protein | - |
| LY388_RS04995 (LY388_04995) | 1055398..1055853 | - | 456 | WP_055033988.1 | hypothetical protein | - |
| LY388_RS05000 (LY388_05000) | 1056132..1056350 | - | 219 | Protein_996 | DUF3709 domain-containing protein | - |
| LY388_RS05010 (LY388_05010) | 1056637..1056984 | - | 348 | WP_000933409.1 | hypothetical protein | - |
| LY388_RS05015 (LY388_05015) | 1057023..1057148 | - | 126 | WP_082796158.1 | DUF3265 domain-containing protein | - |
| LY388_RS05020 (LY388_05020) | 1057130..1057609 | - | 480 | WP_234115912.1 | GNAT family N-acetyltransferase | - |
| LY388_RS05025 (LY388_05025) | 1057754..1058626 | - | 873 | WP_234115913.1 | hypothetical protein | - |
| LY388_RS05030 (LY388_05030) | 1058798..1059376 | - | 579 | WP_234115914.1 | DJ-1/PfpI family protein | - |
| LY388_RS05035 (LY388_05035) | 1059514..1059996 | - | 483 | WP_000422937.1 | GNAT family protein | - |
| LY388_RS05040 (LY388_05040) | 1060162..1060692 | - | 531 | WP_033930568.1 | hypothetical protein | - |
| LY388_RS05045 (LY388_05045) | 1060824..1060889 | - | 66 | Protein_1004 | acetyltransferase | - |
| LY388_RS05050 (LY388_05050) | 1060950..1061720 | - | 771 | WP_148535541.1 | alpha/beta hydrolase | - |
| LY388_RS05055 (LY388_05055) | 1061897..1062286 | - | 390 | WP_199358719.1 | VOC family protein | - |
| LY388_RS05060 (LY388_05060) | 1062490..1062993 | - | 504 | WP_001158952.1 | DinB family protein | - |
| LY388_RS05065 (LY388_05065) | 1063165..1063671 | - | 507 | WP_002053776.1 | GNAT family N-acetyltransferase | - |
| LY388_RS05070 (LY388_05070) | 1064010..1064474 | + | 465 | WP_000140242.1 | hypothetical protein | - |
| LY388_RS05075 (LY388_05075) | 1064547..1064822 | - | 276 | WP_000382676.1 | hypothetical protein | - |
| LY388_RS05080 (LY388_05080) | 1065327..1065416 | - | 90 | WP_080261741.1 | DUF3265 domain-containing protein | - |
| LY388_RS05085 (LY388_05085) | 1065434..1065979 | - | 546 | WP_029853520.1 | hypothetical protein | - |
| LY388_RS05090 (LY388_05090) | 1066502..1066741 | - | 240 | WP_234115996.1 | hypothetical protein | - |
| LY388_RS05095 (LY388_05095) | 1066822..1067124 | - | 303 | WP_232477819.1 | pullulanase | - |
| LY388_RS05100 (LY388_05100) | 1067322..1067468 | + | 147 | WP_234115915.1 | hypothetical protein | - |
| LY388_RS05105 (LY388_05105) | 1068501..1068560 | - | 60 | Protein_1016 | DUF645 family protein | - |
| LY388_RS05110 (LY388_05110) | 1068916..1069869 | - | 954 | WP_162796564.1 | toll/interleukin-1 receptor domain-containing protein | - |
| LY388_RS05115 (LY388_05115) | 1070015..1070521 | - | 507 | WP_207803810.1 | hypothetical protein | - |
| LY388_RS05120 (LY388_05120) | 1070548..1070673 | - | 126 | WP_082796158.1 | DUF3265 domain-containing protein | - |
| LY388_RS05125 (LY388_05125) | 1070655..1071134 | - | 480 | WP_234115912.1 | GNAT family N-acetyltransferase | - |
| LY388_RS05130 (LY388_05130) | 1071170..1071280 | - | 111 | WP_196389672.1 | DUF3265 domain-containing protein | - |
| LY388_RS05135 (LY388_05135) | 1071765..1072184 | - | 420 | WP_114808795.1 | hypothetical protein | - |
| LY388_RS05140 (LY388_05140) | 1072322..1072693 | - | 372 | WP_001164077.1 | MazG nucleotide pyrophosphohydrolase domain-containing protein | - |
| LY388_RS05145 (LY388_05145) | 1072834..1073349 | - | 516 | WP_000090010.1 | hypothetical protein | - |
| LY388_RS05150 (LY388_05150) | 1073468..1074127 | - | 660 | WP_179874873.1 | hypothetical protein | - |
| LY388_RS05155 (LY388_05155) | 1074372..1075334 | + | 963 | WP_000841992.1 | IS91 family transposase ISAzo26 | Transposase |
| LY388_RS05160 (LY388_05160) | 1075416..1075769 | - | 354 | WP_001138366.1 | 50S ribosomal protein L20 | - |
| LY388_RS05165 (LY388_05165) | 1075811..1076005 | - | 195 | WP_001885060.1 | 50S ribosomal protein L35 | - |
| LY388_RS05170 (LY388_05170) | 1076109..1076660 | - | 552 | WP_001894072.1 | translation initiation factor IF-3 | - |
| LY388_RS05175 (LY388_05175) | 1076664..1078592 | - | 1929 | WP_108336265.1 | threonine--tRNA ligase | - |
| LY388_RS05180 (LY388_05180) | 1078885..1080015 | - | 1131 | WP_069213258.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|